Analysis of interatomic Contacts of Structural Units in PDB entry:
4AUT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AUT entry

There is 1 chain in PDB entry 4AUT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 14LEU 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4AUT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 49Right-handed alpha
Helix 2
2
A
49 54Right-handed alpha
Helix 3
3
A
82 84Right-handed 310
Helix 4
4
A
104 113Right-handed alpha
Helix 5
5
A
129 136Right-handed alpha
Helix 6
6
A
142 147Right-handed alpha
Helix 7
7
A
148 151Right-handed 310
Helix 8
8
A
174 182Right-handed alpha
Helix 9
9
A
215 225Right-handed alpha
Helix 10
10
A
226 231Right-handed 310
Helix 11
11
A
259 263Right-handed 310
Helix 12
12
A
264 270Right-handed alpha
Helix 13
13
A
317 322Right-handed alpha
Helix 14
14
A
350 365Right-handed alpha
Helix 15
15
A
402 417Right-handed alpha
Helix 16
16
A
423 426Right-handed 310
Helix 17
17
A
430 438Right-handed alpha
Helix 18
18
A
440 452Right-handed alpha
Helix 19
19
A
459 465Right-handed alpha
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There are 5 sheets in PDB entry 4AUT. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
77 80parallel
Strand 4
A
58 61parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 91first strand
Strand 2
A
96 100anti-parallel
Strand 3
A
190 197anti-parallel
Strand 4
A
153 159anti-parallel
Strand 5
A
165 168anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
199 200anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 238first strand
Strand 2
A
250 257anti-parallel
Strand 3
A
205 212anti-parallel
Strand 4
A
310 316anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 376first strand
Strand 2
A
390 398anti-parallel
Strand 3
A
339 347anti-parallel
Strand 4
A
420 421anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il