Analysis of interatomic Contacts of Structural Units in PDB entry:
4AVA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AVA entry

There is 1 chain in PDB entry 4AVA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2GLY 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4AVA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 16Right-handed alpha
Helix 2
2
A
17 22Right-handed 310
Helix 3
3
A
25 36Right-handed alpha
Helix 4
4
A
88 95Right-handed alpha
Helix 5
5
A
114 124Right-handed alpha
Helix 6
6
A
126 143Right-handed alpha
Helix 7
7
A
165 169Right-handed 310
Helix 8
8
A
177 183Right-handed alpha
Helix 9
9
A
184 186Right-handed 310
Helix 10
10
A
192 203Right-handed alpha
Helix 11
11
A
242 245Right-handed 310
Helix 12
12
A
248 264Right-handed alpha
Helix 13
13
A
277 286Right-handed alpha
Helix 14
14
A
314 331Right-handed alpha
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There are 3 sheets in PDB entry 4AVA. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
108 113anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
86 87anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
101 104anti-parallel
Strand 3
A
65 70anti-parallel
Strand 4
A
76 81anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
207 214anti-parallel
Strand 4
A
217 226anti-parallel
Strand 5
A
233 240anti-parallel
Strand 6
A
268 274parallel
Strand 7
A
298 304anti-parallel
Strand 8
A
292 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il