Analysis of interatomic Contacts of Structural Units in PDB entry:
4AVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AVB entry

There are 2 chains in PDB entry 4AVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9VAL 332
B
 GLY 9VAL 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4AVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 17Right-handed alpha
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
25 28Right-handed 310
Helix 4
4
A
29 36Right-handed alpha
Helix 5
5
A
89 95Right-handed alpha
Helix 6
6
A
114 124Right-handed alpha
Helix 7
7
A
126 141Right-handed alpha
Helix 8
8
A
164 171Right-handed alpha
Helix 9
9
A
177 186Right-handed alpha
Helix 10
10
A
192 201Right-handed alpha
Helix 11
11
A
242 245Right-handed 310
Helix 12
12
A
248 264Right-handed alpha
Helix 13
13
A
277 286Right-handed alpha
Helix 14
14
A
314 331Right-handed alpha
Helix 15
15
B
11 17Right-handed alpha
Helix 16
16
B
18 22Right-handed 310
Helix 17
17
B
25 28Right-handed 310
Helix 18
18
B
29 36Right-handed alpha
Helix 19
19
B
88 95Right-handed alpha
Helix 20
20
B
114 123Right-handed alpha
Helix 21
21
B
126 141Right-handed alpha
Helix 22
22
B
164 171Right-handed alpha
Helix 23
23
B
177 186Right-handed alpha
Helix 24
24
B
192 201Right-handed alpha
Helix 25
25
B
242 245Right-handed 310
Helix 26
26
B
248 264Right-handed alpha
Helix 27
27
B
277 287Right-handed alpha
Helix 28
28
B
307 311Right-handed 310
Helix 29
29
B
314 330Right-handed alpha
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There are 6 sheets in PDB entry 4AVB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
108 113anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
86 87anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
101 104anti-parallel
Strand 3
A
65 70anti-parallel
Strand 4
A
76 81anti-parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 149first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
207 213anti-parallel
Strand 4
A
218 226anti-parallel
Strand 5
A
233 240anti-parallel
Strand 6
A
268 274parallel
Strand 7
A
298 304anti-parallel
Strand 8
A
292 293anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
108 113anti-parallel
Strand 3
B
57 62anti-parallel
Strand 4
B
86 87anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
101 104anti-parallel
Strand 3
B
65 70anti-parallel
Strand 4
B
76 81anti-parallel
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There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
207 213anti-parallel
Strand 4
B
218 226anti-parallel
Strand 5
B
233 240anti-parallel
Strand 6
B
268 274parallel
Strand 7
B
298 304anti-parallel
Strand 8
B
292 293anti-parallel
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