Analysis of interatomic Contacts of Structural Units in PDB entry:
4AVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AVF entry

There are 4 chains in PDB entry 4AVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 467
B
 MET 1GLY 468
C
 MET 1ALA 467
D
 MET 1GLY 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4AVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
24 28Right-handed 310
Helix 3
3
A
54 65Right-handed alpha
Helix 4
4
A
75 89Right-handed alpha
Helix 5
5
A
228 239Right-handed alpha
Helix 6
6
A
253 267Right-handed alpha
Helix 7
7
A
279 289Right-handed alpha
Helix 8
8
A
304 310Right-handed alpha
Helix 9
9
A
315 328Right-handed alpha
Helix 10
10
A
342 353Right-handed alpha
Helix 11
11
A
428 448Right-handed alpha
Helix 12
12
A
451 458Right-handed alpha
Helix 13
13
B
10 12Right-handed 310
Helix 14
14
B
24 28Right-handed 310
Helix 15
15
B
54 65Right-handed alpha
Helix 16
16
B
75 89Right-handed alpha
Helix 17
17
B
228 239Right-handed alpha
Helix 18
18
B
253 267Right-handed alpha
Helix 19
19
B
279 289Right-handed alpha
Helix 20
20
B
304 310Right-handed alpha
Helix 21
21
B
315 328Right-handed alpha
Helix 22
22
B
342 353Right-handed alpha
Helix 23
23
B
428 448Right-handed alpha
Helix 24
24
B
451 458Right-handed alpha
Helix 25
25
C
10 12Right-handed 310
Helix 26
26
C
24 28Right-handed 310
Helix 27
27
C
54 65Right-handed alpha
Helix 28
28
C
75 89Right-handed alpha
Helix 29
29
C
228 239Right-handed alpha
Helix 30
30
C
253 267Right-handed alpha
Helix 31
31
C
279 289Right-handed alpha
Helix 32
32
C
304 311Right-handed alpha
Helix 33
33
C
315 328Right-handed alpha
Helix 34
34
C
342 352Right-handed alpha
Helix 35
35
C
428 448Right-handed alpha
Helix 36
36
C
451 458Right-handed alpha
Helix 37
37
D
10 12Right-handed 310
Helix 38
38
D
24 28Right-handed 310
Helix 39
39
D
54 65Right-handed alpha
Helix 40
40
D
75 89Right-handed alpha
Helix 41
41
D
228 239Right-handed alpha
Helix 42
42
D
253 267Right-handed alpha
Helix 43
43
D
279 289Right-handed alpha
Helix 44
44
D
304 311Right-handed alpha
Helix 45
45
D
315 328Right-handed alpha
Helix 46
46
D
342 353Right-handed alpha
Helix 47
47
D
428 448Right-handed alpha
Helix 48
48
D
451 458Right-handed alpha
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There are 16 sheets in PDB entry 4AVF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
B
461 464parallel
Strand 3
B
14 16anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
461 464anti-parallel
Strand 3
C
4 8parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
38 40anti-parallel
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There are 9 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
356 359parallel
Strand 3
A
334 337parallel
Strand 4
A
293 296parallel
Strand 5
A
271 277parallel
Strand 6
A
243 247parallel
Strand 7
A
220 223parallel
Strand 8
A
67 70parallel
Strand 9
A
44 46parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 376first strand
Strand 2
A
379 383anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
D
461 464parallel
Strand 3
D
14 16anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
38 40anti-parallel
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There are 9 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
356 359parallel
Strand 3
B
334 337parallel
Strand 4
B
293 296parallel
Strand 5
B
271 277parallel
Strand 6
B
243 247parallel
Strand 7
B
220 223parallel
Strand 8
B
67 70parallel
Strand 9
B
44 46parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 376first strand
Strand 2
B
379 383anti-parallel
Strand 3
B
423 424anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 16first strand
Strand 2
C
461 464anti-parallel
Strand 3
D
4 8parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 35first strand
Strand 2
C
38 40anti-parallel
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There are 9 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 46first strand
Strand 2
C
356 359parallel
Strand 3
C
334 337parallel
Strand 4
C
293 296parallel
Strand 5
C
271 277parallel
Strand 6
C
243 247parallel
Strand 7
C
220 223parallel
Strand 8
C
67 70parallel
Strand 9
C
44 46parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
372 376first strand
Strand 2
C
379 383anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 35first strand
Strand 2
D
38 40anti-parallel
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There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 46first strand
Strand 2
D
356 359parallel
Strand 3
D
334 337parallel
Strand 4
D
293 296parallel
Strand 5
D
271 277parallel
Strand 6
D
243 247parallel
Strand 7
D
220 223parallel
Strand 8
D
67 70parallel
Strand 9
D
44 46parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
372 376first strand
Strand 2
D
379 383anti-parallel
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