Analysis of interatomic Contacts of Structural Units in PDB entry:
4AVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AVP entry

There are 4 chains in PDB entry 4AVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 334PHE 426
B
 SER 334PHE 426
C
 SER 334PHE 426
D
 SER 334PHE 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4AVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
336 347Right-handed alpha
Helix 2
2
A
348 351Right-handed 310
Helix 3
3
A
367 379Right-handed alpha
Helix 4
4
A
385 400Right-handed alpha
Helix 5
5
A
417 426Right-handed alpha
Helix 6
6
B
336 347Right-handed alpha
Helix 7
7
B
348 351Right-handed 310
Helix 8
8
B
367 379Right-handed alpha
Helix 9
9
B
385 399Right-handed alpha
Helix 10
10
B
417 426Right-handed alpha
Helix 11
11
C
336 347Right-handed alpha
Helix 12
12
C
348 351Right-handed 310
Helix 13
13
C
367 379Right-handed alpha
Helix 14
14
C
385 399Right-handed alpha
Helix 15
15
C
417 426Right-handed alpha
Helix 16
16
D
336 347Right-handed alpha
Helix 17
17
D
348 351Right-handed 310
Helix 18
18
D
367 379Right-handed alpha
Helix 19
19
D
385 399Right-handed alpha
Helix 20
20
D
417 426Right-handed alpha
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There are 4 sheets in PDB entry 4AVP. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
362 365anti-parallel
Strand 3
A
411 414anti-parallel
Strand 4
A
402 404anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 356first strand
Strand 2
B
362 365anti-parallel
Strand 3
B
411 414anti-parallel
Strand 4
B
402 404anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 356first strand
Strand 2
C
362 365anti-parallel
Strand 3
C
411 414anti-parallel
Strand 4
C
402 404anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
354 356first strand
Strand 2
D
362 365anti-parallel
Strand 3
D
411 414anti-parallel
Strand 4
D
402 404anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il