Analysis of interatomic Contacts of Structural Units in PDB entry:
4AVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AVZ entry

There is 1 chain in PDB entry 4AVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 112VAL 709
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4AVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 120Right-handed alpha
Helix 2
2
A
122 126Right-handed 310
Helix 3
3
A
130 134Right-handed 310
Helix 4
4
A
142 147Right-handed alpha
Helix 5
5
A
152 155Right-handed 310
Helix 6
6
A
172 186Right-handed alpha
Helix 7
7
A
209 212Right-handed 310
Helix 8
8
A
234 237Right-handed 310
Helix 9
9
A
251 255Right-handed 310
Helix 10
10
A
363 367Right-handed alpha
Helix 11
11
A
397 401Right-handed 310
Helix 12
12
A
619 623Right-handed 310
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There are 7 sheets in PDB entry 4AVZ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
140 141anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
222 226parallel
Strand 3
A
258 264parallel
Strand 4
A
291 297parallel
Strand 5
A
318 319anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
291 297parallel
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There are 12 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 201first strand
Strand 2
A
229 232parallel
Strand 3
A
268 270parallel
Strand 4
A
300 302parallel
Strand 5
A
327 329parallel
Strand 6
A
356 358parallel
Strand 7
A
384 388parallel
Strand 8
A
417 420parallel
Strand 9
A
448 451parallel
Strand 10
A
489 491parallel
Strand 11
A
517 519parallel
Strand 12
A
545 546parallel
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There are 11 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
241 245parallel
Strand 3
A
283 287parallel
Strand 4
A
310 312parallel
Strand 5
A
340 345parallel
Strand 6
A
368 373parallel
Strand 7
A
390 396parallel
Strand 8
A
423 429parallel
Strand 9
A
462 467parallel
Strand 10
A
499 504parallel
Strand 11
A
522 525parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 536first strand
Strand 2
A
566 568parallel
Strand 3
A
594 596parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 561first strand
Strand 2
A
585 589parallel
Strand 3
A
614 616parallel
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