Analysis of interatomic Contacts of Structural Units in PDB entry:
4AYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4AYH entry

There is 1 chain in PDB entry 4AYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8HIS 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 4AYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 19Right-handed alpha
Helix 2
2
A
23 27Right-handed 310
Helix 3
3
A
31 36Right-handed 310
Helix 4
4
A
42 48Right-handed alpha
Helix 5
5
A
51 61Right-handed alpha
Helix 6
6
A
66 79Right-handed alpha
Helix 7
7
A
162 169Right-handed alpha
Helix 8
8
A
182 192Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 4AYH.

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
91 96anti-parallel
Strand 4
A
99 114anti-parallel
Strand 5
A
120 128anti-parallel
Strand 6
A
138 142anti-parallel
Strand 7
A
154 159anti-parallel
Strand 8
A
175 178anti-parallel
Strand 9
A
37 41anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il