Analysis of interatomic Contacts of Structural Units in PDB entry:
4B0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B0E entry

There are 4 chains in PDB entry 4B0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 28ARG 123
B
 GLN 27PHE 124
C
 LEU 28PRO 122
D
 ASP 18PRO 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 4B0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
66 73Right-handed alpha
Helix 2
2
A
76 80Right-handed 310
Helix 3
3
A
81 86Right-handed alpha
Helix 4
4
A
93 97Right-handed 310
Helix 5
5
A
106 108Right-handed 310
Helix 6
6
A
116 119Right-handed 310
Helix 7
7
B
66 73Right-handed alpha
Helix 8
8
B
76 80Right-handed 310
Helix 9
9
B
81 86Right-handed alpha
Helix 10
10
B
93 97Right-handed 310
Helix 11
11
B
116 119Right-handed 310
Helix 12
12
C
66 73Right-handed alpha
Helix 13
13
C
76 80Right-handed 310
Helix 14
14
C
80 84Right-handed 310
Helix 15
15
C
93 97Right-handed 310
Helix 16
16
C
116 119Right-handed 310
Helix 17
17
D
19 24Right-handed alpha
Helix 18
18
D
66 73Right-handed alpha
Helix 19
19
D
76 80Right-handed 310
Helix 20
20
D
80 84Right-handed 310
Helix 21
21
D
93 97Right-handed 310
Helix 22
22
D
106 108Right-handed 310
Helix 23
23
D
116 119Right-handed 310
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There are 4 sheets in PDB entry 4B0E. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 63first strand
Strand 2
A
41 55anti-parallel
Strand 3
A
30 38anti-parallel
Strand 4
A
110 114parallel
Strand 5
A
101 105anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 64first strand
Strand 2
B
41 55anti-parallel
Strand 3
B
30 38anti-parallel
Strand 4
B
110 114parallel
Strand 5
B
101 105anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 64first strand
Strand 2
C
41 55anti-parallel
Strand 3
C
30 38anti-parallel
Strand 4
C
110 114parallel
Strand 5
C
101 105anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 63first strand
Strand 2
D
41 55anti-parallel
Strand 3
D
30 38anti-parallel
Strand 4
D
110 114parallel
Strand 5
D
101 105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il