Analysis of interatomic Contacts of Structural Units in PDB entry:
4B16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B16 entry

There is 1 chain in PDB entry 4B16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7ARG 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 4B16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed alpha
Helix 2
2
A
25 32Right-handed alpha
Helix 3
3
A
56 60Right-handed 310
Helix 4
4
A
63 65Right-handed 310
Helix 5
5
A
66 76Right-handed alpha
Helix 6
6
A
96 109Right-handed alpha
Helix 7
7
A
137 147Right-handed alpha
Helix 8
8
A
169 175Right-handed alpha
Helix 9
9
A
198 212Right-handed alpha
Helix 10
10
A
232 239Right-handed alpha
Helix 11
11
A
239 245Right-handed alpha
Helix 12
12
A
257 265Right-handed alpha
Helix 13
13
A
266 270Right-handed 310
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There are 2 sheets in PDB entry 4B16. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
250 256parallel
Strand 3
A
216 222parallel
Strand 4
A
180 184parallel
Strand 5
A
155 159parallel
Strand 6
A
124 128parallel
Strand 7
A
79 88parallel
Strand 8
A
37 46parallel
Strand 9
A
9 14first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
118 121anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il