Analysis of interatomic Contacts of Structural Units in PDB entry:
4B28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B28 entry

There is 1 chain in PDB entry 4B28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9GLY 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4B28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 45Right-handed alpha
Helix 2
2
A
51 70Right-handed alpha
Helix 3
3
A
79 88Right-handed alpha
Helix 4
4
A
92 99Right-handed alpha
Helix 5
5
A
120 125Right-handed 310
Helix 6
6
A
140 145Right-handed alpha
Helix 7
7
A
147 167Right-handed alpha
Helix 8
8
A
179 189Right-handed alpha
Helix 9
9
A
196 205Right-handed alpha
Helix 10
10
A
208 237Right-handed alpha
Helix 11
11
A
243 257Right-handed alpha
Helix 12
12
A
272 275Right-handed 310
Helix 13
13
A
301 303Right-handed 310
Helix 14
14
A
320 340Right-handed alpha
Helix 15
15
A
346 353Right-handed alpha
Helix 16
16
A
358 363Right-handed alpha
Helix 17
17
A
440 445Right-handed alpha
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There are 4 sheets in PDB entry 4B28. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
112 115parallel
Strand 3
A
103 107anti-parallel
Strand 4
A
74 77anti-parallel
Strand 5
A
172 175parallel
Strand 6
A
192 195parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
298 299anti-parallel
Strand 3
A
305 306anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 270first strand
Strand 2
A
290 295anti-parallel
Strand 3
A
309 314anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 382first strand
Strand 2
A
370 373anti-parallel
Strand 3
A
402 410anti-parallel
Strand 4
A
417 426anti-parallel
Strand 5
A
431 433anti-parallel
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