Analysis of interatomic Contacts of Structural Units in PDB entry:
4B5T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B5T entry

There are 2 chains in PDB entry 4B5T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 251
B
 MET 1GLY 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 4B5T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 11Right-handed alpha
Helix 2
2
A
24 33Right-handed alpha
Helix 3
3
A
49 61Right-handed alpha
Helix 4
4
A
75 85Right-handed alpha
Helix 5
5
A
97 108Right-handed alpha
Helix 6
6
A
119 123Right-handed 310
Helix 7
7
A
123 127Right-handed 310
Helix 8
8
A
133 138Right-handed alpha
Helix 9
9
A
139 142Right-handed 310
Helix 10
10
A
150 156Right-handed alpha
Helix 11
11
A
156 162Right-handed alpha
Helix 12
12
A
172 181Right-handed alpha
Helix 13
13
A
188 205Right-handed alpha
Helix 14
14
A
215 226Right-handed alpha
Helix 15
15
A
235 249Right-handed alpha
Helix 16
16
B
3 11Right-handed alpha
Helix 17
17
B
24 33Right-handed alpha
Helix 18
18
B
49 61Right-handed alpha
Helix 19
19
B
75 85Right-handed alpha
Helix 20
20
B
97 108Right-handed alpha
Helix 21
21
B
119 123Right-handed 310
Helix 22
22
B
123 127Right-handed 310
Helix 23
23
B
133 138Right-handed alpha
Helix 24
24
B
139 142Right-handed 310
Helix 25
25
B
150 156Right-handed alpha
Helix 26
26
B
156 162Right-handed alpha
Helix 27
27
B
172 180Right-handed alpha
Helix 28
28
B
188 205Right-handed alpha
Helix 29
29
B
215 225Right-handed alpha
Helix 30
30
B
235 250Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4B5T. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
229 234parallel
Strand 3
A
208 212parallel
Strand 4
A
166 171parallel
Strand 5
A
143 148parallel
Strand 6
A
89 92parallel
Strand 7
A
66 70parallel
Strand 8
A
38 42parallel
Strand 9
A
15 20parallel
Back to list of sheets
Back to top of page

There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 20first strand
Strand 2
B
229 234parallel
Strand 3
B
208 212parallel
Strand 4
B
166 171parallel
Strand 5
B
143 148parallel
Strand 6
B
89 92parallel
Strand 7
B
66 70parallel
Strand 8
B
38 42parallel
Strand 9
B
15 20parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il