Analysis of interatomic Contacts of Structural Units in PDB entry:
4B60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B60 entry

There are 4 chains in PDB entry 4B60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 195ASN 503
B
 THR 195TYR 501
C
 GLN 4VAL 17
D
 HIS 6VAL 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4B60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
197 199Right-handed 310
Helix 2
2
A
210 214Right-handed 310
Helix 3
3
A
218 220Right-handed 310
Helix 4
4
A
289 292Right-handed 310
Helix 5
5
A
405 409Right-handed 310
Helix 6
6
A
427 432Right-handed 310
Helix 7
7
B
197 199Right-handed 310
Helix 8
8
B
210 214Right-handed 310
Helix 9
9
B
218 220Right-handed 310
Helix 10
10
B
289 292Right-handed 310
Helix 11
11
B
405 409Right-handed 310
Helix 12
12
B
427 430Right-handed 310
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There are 8 sheets in PDB entry 4B60. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 209first strand
Strand 2
A
225 233anti-parallel
Strand 3
A
298 307anti-parallel
Strand 4
A
251 252anti-parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
327 335parallel
Strand 3
A
316 324anti-parallel
Strand 4
A
242 247anti-parallel
Strand 5
A
282 287anti-parallel
Strand 6
A
270 277anti-parallel
Strand 7
A
265 267anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
346 356anti-parallel
Strand 3
A
361 370anti-parallel
Strand 4
A
453 460anti-parallel
Strand 5
A
396 402anti-parallel
Strand 6
A
423 425anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 436first strand
Strand 2
A
442 448anti-parallel
Strand 3
A
375 386anti-parallel
Strand 4
A
469 478anti-parallel
Strand 5
A
490 501anti-parallel
Strand 6
C
6 16parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 209first strand
Strand 2
B
225 233anti-parallel
Strand 3
B
298 307anti-parallel
Strand 4
B
251 252anti-parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
327 335parallel
Strand 3
B
316 324anti-parallel
Strand 4
B
242 247anti-parallel
Strand 5
B
282 287anti-parallel
Strand 6
B
270 277anti-parallel
Strand 7
B
265 267anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
346 356anti-parallel
Strand 3
B
361 370anti-parallel
Strand 4
B
453 460anti-parallel
Strand 5
B
396 402anti-parallel
Strand 6
B
423 425anti-parallel
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There are 6 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 436first strand
Strand 2
B
442 446anti-parallel
Strand 3
B
378 386anti-parallel
Strand 4
B
469 475anti-parallel
Strand 5
B
491 500anti-parallel
Strand 6
D
7 15parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il