Analysis of interatomic Contacts of Structural Units in PDB entry:
4B79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B79 entry

There are 2 chains in PDB entry 4B79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 241
B
 MET 1ALA 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4B79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
64 75Right-handed alpha
Helix 3
3
A
89 94Right-handed 310
Helix 4
4
A
95 107Right-handed alpha
Helix 5
5
A
107 122Right-handed alpha
Helix 6
6
A
133 137Right-handed 310
Helix 7
7
A
143 165Right-handed alpha
Helix 8
8
A
190 200Right-handed alpha
Helix 9
9
A
208 220Right-handed alpha
Helix 10
10
A
221 225Right-handed 310
Helix 11
11
A
237 241Right-handed 310
Helix 12
12
B
20 33Right-handed alpha
Helix 13
13
B
64 75Right-handed alpha
Helix 14
14
B
89 94Right-handed 310
Helix 15
15
B
95 107Right-handed alpha
Helix 16
16
B
107 122Right-handed alpha
Helix 17
17
B
133 137Right-handed 310
Helix 18
18
B
143 165Right-handed alpha
Helix 19
19
B
190 200Right-handed alpha
Helix 20
20
B
208 220Right-handed alpha
Helix 21
21
B
221 225Right-handed 310
Helix 22
22
B
237 241Right-handed 310
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There are 2 sheets in PDB entry 4B79. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
36 41parallel
Strand 3
A
12 16parallel
Strand 4
A
80 83parallel
Strand 5
A
126 131parallel
Strand 6
A
169 176parallel
Strand 7
A
231 234parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
36 41parallel
Strand 3
B
12 16parallel
Strand 4
B
80 83parallel
Strand 5
B
126 131parallel
Strand 6
B
169 176parallel
Strand 7
B
231 234parallel
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