Analysis of interatomic Contacts of Structural Units in PDB entry:
4B98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4B98 entry

There are 4 chains in PDB entry 4B98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8ALA 448
B
 PRO 9ALA 448
C
 ALA 8ALA 448
D
 ALA 8ALA 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 4B98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
16 19Right-handed 310
Helix 3
3
A
26 33Right-handed alpha
Helix 4
4
A
57 62Right-handed alpha
Helix 5
5
A
69 81Right-handed alpha
Helix 6
6
A
93 106Right-handed alpha
Helix 7
7
A
119 138Right-handed alpha
Helix 8
8
A
157 164Right-handed alpha
Helix 9
9
A
166 171Right-handed alpha
Helix 10
10
A
200 216Right-handed alpha
Helix 11
11
A
240 253Right-handed alpha
Helix 12
12
A
272 278Right-handed alpha
Helix 13
13
A
287 292Right-handed 310
Helix 14
14
A
304 312Right-handed alpha
Helix 15
15
A
331 348Right-handed alpha
Helix 16
16
A
349 367Right-handed alpha
Helix 17
17
A
396 410Right-handed alpha
Helix 18
18
A
429 446Right-handed alpha
Helix 19
19
B
11 15Right-handed 310
Helix 20
20
B
16 19Right-handed 310
Helix 21
21
B
26 33Right-handed alpha
Helix 22
22
B
57 62Right-handed alpha
Helix 23
23
B
69 83Right-handed alpha
Helix 24
24
B
93 106Right-handed alpha
Helix 25
25
B
119 138Right-handed alpha
Helix 26
26
B
157 164Right-handed alpha
Helix 27
27
B
166 171Right-handed alpha
Helix 28
28
B
200 216Right-handed alpha
Helix 29
29
B
240 253Right-handed alpha
Helix 30
30
B
272 278Right-handed alpha
Helix 31
31
B
287 292Right-handed 310
Helix 32
32
B
304 312Right-handed alpha
Helix 33
33
B
331 348Right-handed alpha
Helix 34
34
B
349 367Right-handed alpha
Helix 35
35
B
396 409Right-handed alpha
Helix 36
36
B
429 447Right-handed alpha
Helix 37
37
C
11 15Right-handed 310
Helix 38
38
C
16 19Right-handed 310
Helix 39
39
C
26 33Right-handed alpha
Helix 40
40
C
69 81Right-handed alpha
Helix 41
41
C
93 106Right-handed alpha
Helix 42
42
C
119 138Right-handed alpha
Helix 43
43
C
157 164Right-handed alpha
Helix 44
44
C
166 171Right-handed alpha
Helix 45
45
C
200 206Right-handed alpha
Helix 46
46
C
206 216Right-handed alpha
Helix 47
47
C
240 253Right-handed alpha
Helix 48
48
C
272 278Right-handed alpha
Helix 49
49
C
287 292Right-handed 310
Helix 50
50
C
304 312Right-handed alpha
Helix 51
51
C
331 348Right-handed alpha
Helix 52
52
C
349 367Right-handed alpha
Helix 53
53
C
396 410Right-handed alpha
Helix 54
54
C
429 446Right-handed alpha
Helix 55
55
D
16 19Right-handed 310
Helix 56
56
D
26 33Right-handed alpha
Helix 57
57
D
57 62Right-handed alpha
Helix 58
58
D
69 81Right-handed alpha
Helix 59
59
D
93 106Right-handed alpha
Helix 60
60
D
119 138Right-handed alpha
Helix 61
61
D
157 164Right-handed alpha
Helix 62
62
D
166 171Right-handed alpha
Helix 63
63
D
200 206Right-handed alpha
Helix 64
64
D
206 216Right-handed alpha
Helix 65
65
D
240 253Right-handed alpha
Helix 66
66
D
272 278Right-handed alpha
Helix 67
67
D
287 292Right-handed 310
Helix 68
68
D
304 312Right-handed alpha
Helix 69
69
D
331 348Right-handed alpha
Helix 70
70
D
349 367Right-handed alpha
Helix 71
71
D
396 410Right-handed alpha
Helix 72
72
D
429 447Right-handed alpha
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There are 12 sheets in PDB entry 4B98. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 41first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
52 55anti-parallel
Strand 4
A
411 412parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 117first strand
Strand 2
A
298 303anti-parallel
Strand 3
A
283 286anti-parallel
Strand 4
A
255 259parallel
Strand 5
A
220 225parallel
Strand 6
A
145 149parallel
Strand 7
A
180 182parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 380first strand
Strand 2
A
383 388anti-parallel
Strand 3
A
419 422anti-parallel
Strand 4
A
414 416anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
44 47anti-parallel
Strand 3
B
52 55anti-parallel
Strand 4
B
411 412parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 117first strand
Strand 2
B
298 303anti-parallel
Strand 3
B
283 286anti-parallel
Strand 4
B
255 259parallel
Strand 5
B
220 225parallel
Strand 6
B
145 149parallel
Strand 7
B
180 182parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 380first strand
Strand 2
B
383 388anti-parallel
Strand 3
B
419 422anti-parallel
Strand 4
B
414 416anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
44 47anti-parallel
Strand 3
C
52 55anti-parallel
Strand 4
C
411 412parallel
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There are 7 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 117first strand
Strand 2
C
298 303anti-parallel
Strand 3
C
283 286anti-parallel
Strand 4
C
255 259parallel
Strand 5
C
220 225parallel
Strand 6
C
145 149parallel
Strand 7
C
180 182parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
374 380first strand
Strand 2
C
383 388anti-parallel
Strand 3
C
419 422anti-parallel
Strand 4
C
414 416anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 41first strand
Strand 2
D
44 47anti-parallel
Strand 3
D
52 55anti-parallel
Strand 4
D
411 412parallel
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There are 7 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 117first strand
Strand 2
D
298 303anti-parallel
Strand 3
D
283 286anti-parallel
Strand 4
D
255 259parallel
Strand 5
D
220 225parallel
Strand 6
D
145 149parallel
Strand 7
D
180 182parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
374 380first strand
Strand 2
D
383 388anti-parallel
Strand 3
D
419 422anti-parallel
Strand 4
D
414 416anti-parallel
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