Analysis of interatomic Contacts of Structural Units in PDB entry:
4BAE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BAE entry

There are 4 chains in PDB entry 4BAE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 22	PRO 254
B	GLY 22	PRO 254
C	GLY 22	PRO 254
D	GLY 22	GLY 255

There are 24 helices in PDB entry 4BAE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	29	Right-handed alpha
Helix 2	2	A	30	35	Right-handed alpha
Helix 3	3	A	38	59	Right-handed alpha
Helix 4	4	A	94	102	Right-handed alpha
Helix 5	5	A	124	131	Right-handed alpha
Helix 6	6	A	186	201	Right-handed alpha
Helix 7	7	B	23	29	Right-handed alpha
Helix 8	8	B	30	35	Right-handed alpha
Helix 9	9	B	38	59	Right-handed alpha
Helix 10	10	B	94	102	Right-handed alpha
Helix 11	11	B	124	131	Right-handed alpha
Helix 12	12	B	186	201	Right-handed alpha
Helix 13	13	C	23	29	Right-handed alpha
Helix 14	14	C	30	35	Right-handed alpha
Helix 15	15	C	38	59	Right-handed alpha
Helix 16	16	C	94	102	Right-handed alpha
Helix 17	17	C	125	131	Right-handed alpha
Helix 18	18	C	186	201	Right-handed alpha
Helix 19	19	D	23	29	Right-handed alpha
Helix 20	20	D	30	35	Right-handed alpha
Helix 21	21	D	38	59	Right-handed alpha
Helix 22	22	D	94	102	Right-handed alpha
Helix 23	23	D	124	131	Right-handed alpha
Helix 24	24	D	186	201	Right-handed alpha

There are 16 sheets in PDB entry 4BAE. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	144	151	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	163	first strand
Strand 2	A	144	151	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	251	first strand
Strand 2	A	205	210	anti-parallel
Strand 3	A	64	69	parallel
Strand 4	A	74	79	anti-parallel
Strand 5	A	168	175	anti-parallel
Strand 6	A	132	141	anti-parallel
Strand 7	A	144	151	anti-parallel
Strand 8	A	154	155	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	251	first strand
Strand 2	A	205	210	anti-parallel
Strand 3	A	64	69	parallel
Strand 4	A	74	79	anti-parallel
Strand 5	A	168	175	anti-parallel
Strand 6	A	132	141	anti-parallel
Strand 7	A	144	151	anti-parallel
Strand 8	A	159	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	144	151	parallel

Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	163	first strand
Strand 2	B	144	151	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	251	first strand
Strand 2	B	205	210	anti-parallel
Strand 3	B	64	69	parallel
Strand 4	B	74	79	anti-parallel
Strand 5	B	168	175	anti-parallel
Strand 6	B	132	141	anti-parallel
Strand 7	B	144	151	anti-parallel
Strand 8	B	154	155	parallel

Back to list of sheets
Back to top of page

There are 8 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	251	first strand
Strand 2	B	205	210	anti-parallel
Strand 3	B	64	69	parallel
Strand 4	B	74	79	anti-parallel
Strand 5	B	168	175	anti-parallel
Strand 6	B	132	141	anti-parallel
Strand 7	B	144	151	anti-parallel
Strand 8	B	159	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	144	151	parallel

Back to list of sheets
Back to top of page

There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	163	first strand
Strand 2	C	144	151	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	251	first strand
Strand 2	C	205	210	anti-parallel
Strand 3	C	64	69	parallel
Strand 4	C	74	79	anti-parallel
Strand 5	C	168	175	anti-parallel
Strand 6	C	132	141	anti-parallel
Strand 7	C	144	151	anti-parallel
Strand 8	C	154	155	parallel

Back to list of sheets
Back to top of page

There are 8 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	251	first strand
Strand 2	C	205	210	anti-parallel
Strand 3	C	64	69	parallel
Strand 4	C	74	79	anti-parallel
Strand 5	C	168	175	anti-parallel
Strand 6	C	132	141	anti-parallel
Strand 7	C	144	151	anti-parallel
Strand 8	C	159	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	144	151	parallel

Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	163	first strand
Strand 2	D	144	151	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	251	first strand
Strand 2	D	205	210	anti-parallel
Strand 3	D	64	69	parallel
Strand 4	D	74	79	anti-parallel
Strand 5	D	168	175	anti-parallel
Strand 6	D	132	141	anti-parallel
Strand 7	D	144	151	anti-parallel
Strand 8	D	154	155	parallel

Back to list of sheets
Back to top of page

There are 8 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	251	first strand
Strand 2	D	205	210	anti-parallel
Strand 3	D	64	69	parallel
Strand 4	D	74	79	anti-parallel
Strand 5	D	168	175	anti-parallel
Strand 6	D	132	141	anti-parallel
Strand 7	D	144	151	anti-parallel
Strand 8	D	159	163	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BAE

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BAE