Analysis of interatomic Contacts of Structural Units in PDB entry:
4BBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BBJ entry

There are 2 chains in PDB entry 4BBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 73VAL 425
A
 LYS 427LEU 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4BBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 102Right-handed alpha
Helix 2
2
A
110 128Right-handed alpha
Helix 3
3
A
130 144Right-handed alpha
Helix 4
4
A
147 169Right-handed alpha
Helix 5
5
A
170 173Right-handed 310
Helix 6
6
A
187 218Right-handed alpha
Helix 7
7
A
273 278Right-handed alpha
Helix 8
8
A
309 312Right-handed 310
Helix 9
9
A
313 328Right-handed alpha
Helix 10
10
A
334 362Right-handed alpha
Helix 11
11
A
365 382Right-handed alpha
Helix 12
12
A
385 403Right-handed alpha
Helix 13
13
A
410 418Right-handed alpha
Helix 14
14
A
447 460Right-handed alpha
Helix 15
15
A
464 478Right-handed alpha
Helix 16
16
A
508 516Right-handed alpha
Helix 17
17
A
519 532Right-handed alpha
Helix 18
18
A
558 569Right-handed alpha
Helix 19
19
A
580 591Right-handed alpha
Helix 20
20
A
601 615Right-handed alpha
Helix 21
21
A
625 627Right-handed 310
Helix 22
22
A
628 635Right-handed alpha
Helix 23
23
A
645 652Right-handed alpha
Helix 24
24
A
661 698Right-handed alpha
Helix 25
25
A
709 729Right-handed alpha
Helix 26
26
A
730 734Right-handed 310
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There are 7 sheets in PDB entry 4BBJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
226 230anti-parallel
Strand 3
A
249 252anti-parallel
Strand 4
A
301 308anti-parallel
Strand 5
A
261 272anti-parallel
Strand 6
A
296 297anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
226 230anti-parallel
Strand 3
A
249 252anti-parallel
Strand 4
A
301 308anti-parallel
Strand 5
A
261 272anti-parallel
Strand 6
A
283 286anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
261 272anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
226 230anti-parallel
Strand 3
A
249 252anti-parallel
Strand 4
A
301 308anti-parallel
Strand 5
A
261 272anti-parallel
Strand 6
A
290 291anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 297first strand
Strand 2
A
261 272anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
654 656anti-parallel
Strand 3
A
637 641parallel
Strand 4
A
619 623parallel
Strand 5
A
422 425parallel
Strand 6
A
572 577parallel
Strand 7
A
595 598parallel
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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 443first strand
Strand 2
A
544 552anti-parallel
Strand 3
A
535 541anti-parallel
Strand 4
A
502 507anti-parallel
Strand 5
A
494 499anti-parallel
Strand 6
A
484 488anti-parallel
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