Analysis of interatomic Contacts of Structural Units in PDB entry:
4BBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BBY entry

There are 3 chains in PDB entry 4BBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 81	LEU 658
B	GLY 81	LEU 658
C	GLY 81	SER 240

There are 85 helices in PDB entry 4BBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	86	90	Right-handed 310
Helix 2	2	A	127	137	Right-handed alpha
Helix 3	3	A	161	172	Right-handed alpha
Helix 4	4	A	178	185	Right-handed alpha
Helix 5	5	A	190	199	Right-handed alpha
Helix 6	6	A	214	228	Right-handed alpha
Helix 7	7	A	283	294	Right-handed alpha
Helix 8	8	A	309	317	Right-handed alpha
Helix 9	9	A	322	327	Right-handed alpha
Helix 10	10	A	328	332	Right-handed alpha
Helix 11	11	A	360	365	Right-handed alpha
Helix 12	12	A	397	411	Right-handed alpha
Helix 13	13	A	422	432	Right-handed alpha
Helix 14	14	A	473	490	Right-handed alpha
Helix 15	15	A	497	521	Right-handed alpha
Helix 16	16	A	536	555	Right-handed alpha
Helix 17	17	A	590	609	Right-handed alpha
Helix 18	18	A	623	625	Right-handed 310
Helix 19	19	A	626	632	Right-handed alpha
Helix 20	20	A	632	647	Right-handed alpha
Helix 21	21	B	86	90	Right-handed 310
Helix 22	22	B	127	137	Right-handed alpha
Helix 23	23	B	161	172	Right-handed alpha
Helix 24	24	B	178	185	Right-handed alpha
Helix 25	25	B	190	200	Right-handed alpha
Helix 26	26	B	214	228	Right-handed alpha
Helix 27	27	B	283	294	Right-handed alpha
Helix 28	28	B	309	317	Right-handed alpha
Helix 29	29	B	322	327	Right-handed alpha
Helix 30	30	B	328	332	Right-handed alpha
Helix 31	31	B	360	365	Right-handed alpha
Helix 32	32	B	397	411	Right-handed alpha
Helix 33	33	B	422	432	Right-handed alpha
Helix 34	34	B	473	490	Right-handed alpha
Helix 35	35	B	497	507	Right-handed alpha
Helix 36	36	B	510	521	Right-handed alpha
Helix 37	37	B	536	555	Right-handed alpha
Helix 38	38	B	590	609	Right-handed alpha
Helix 39	39	B	623	625	Right-handed 310
Helix 40	40	B	626	632	Right-handed alpha
Helix 41	41	B	632	647	Right-handed alpha
Helix 42	42	C	86	90	Right-handed 310
Helix 43	43	C	127	137	Right-handed alpha
Helix 44	44	C	151	155	Right-handed 310
Helix 45	45	C	161	172	Right-handed alpha
Helix 46	46	C	178	185	Right-handed alpha
Helix 47	47	C	190	200	Right-handed alpha
Helix 48	48	C	214	229	Right-handed alpha
Helix 49	49	C	283	293	Right-handed alpha
Helix 50	50	C	309	317	Right-handed alpha
Helix 51	51	C	322	327	Right-handed alpha
Helix 52	52	C	328	332	Right-handed alpha
Helix 53	53	C	360	365	Right-handed alpha
Helix 54	54	C	397	411	Right-handed alpha
Helix 55	55	C	423	431	Right-handed alpha
Helix 56	56	C	473	490	Right-handed alpha
Helix 57	57	C	497	509	Right-handed alpha
Helix 58	58	C	510	521	Right-handed alpha
Helix 59	59	C	536	555	Right-handed alpha
Helix 60	60	C	590	609	Right-handed alpha
Helix 61	61	C	623	625	Right-handed 310
Helix 62	62	C	626	632	Right-handed alpha
Helix 63	63	C	632	647	Right-handed alpha
Helix 64	64	D	86	90	Right-handed 310
Helix 65	65	D	127	137	Right-handed alpha
Helix 66	66	D	151	155	Right-handed 310
Helix 67	67	D	161	171	Right-handed alpha
Helix 68	68	D	178	185	Right-handed alpha
Helix 69	69	D	190	200	Right-handed alpha
Helix 70	70	D	214	229	Right-handed alpha
Helix 71	71	D	283	294	Right-handed alpha
Helix 72	72	D	309	317	Right-handed alpha
Helix 73	73	D	322	327	Right-handed alpha
Helix 74	74	D	328	332	Right-handed alpha
Helix 75	75	D	360	365	Right-handed alpha
Helix 76	76	D	397	411	Right-handed alpha
Helix 77	77	D	422	431	Right-handed alpha
Helix 78	78	D	473	490	Right-handed alpha
Helix 79	79	D	497	507	Right-handed alpha
Helix 80	80	D	510	521	Right-handed alpha
Helix 81	81	D	536	555	Right-handed alpha
Helix 82	82	D	590	609	Right-handed alpha
Helix 83	83	D	623	625	Right-handed 310
Helix 84	84	D	626	632	Right-handed alpha
Helix 85	85	D	632	647	Right-handed alpha

There are 20 sheets in PDB entry 4BBY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	111	113	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	176	first strand
Strand 2	A	208	211	anti-parallel
Strand 3	A	255	259	parallel
Strand 4	A	231	235	parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	270	first strand
Strand 2	A	275	279	anti-parallel
Strand 3	A	373	380	anti-parallel
Strand 4	A	333	340	anti-parallel
Strand 5	A	343	346	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	382	383	anti-parallel

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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	387	395	anti-parallel
Strand 3	A	464	472	anti-parallel
Strand 4	A	417	421	anti-parallel
Strand 5	A	562	570	anti-parallel
Strand 6	A	574	584	anti-parallel
Strand 7	A	523	533	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	113	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	208	211	anti-parallel
Strand 3	B	255	259	parallel
Strand 4	B	231	235	parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	270	first strand
Strand 2	B	275	279	anti-parallel
Strand 3	B	373	380	anti-parallel
Strand 4	B	333	340	anti-parallel
Strand 5	B	343	346	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	297	first strand
Strand 2	B	382	383	anti-parallel

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There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	495	first strand
Strand 2	B	387	395	anti-parallel
Strand 3	B	464	472	anti-parallel
Strand 4	B	417	421	anti-parallel
Strand 5	B	562	571	anti-parallel
Strand 6	B	574	584	anti-parallel
Strand 7	B	523	533	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	111	113	anti-parallel
Strand 3	C	124	125	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	176	first strand
Strand 2	C	208	211	anti-parallel
Strand 3	C	255	259	parallel
Strand 4	C	231	235	parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	270	first strand
Strand 2	C	275	279	anti-parallel
Strand 3	C	373	380	anti-parallel
Strand 4	C	333	340	anti-parallel
Strand 5	C	343	345	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	382	383	anti-parallel

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There are 7 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	495	first strand
Strand 2	C	387	395	anti-parallel
Strand 3	C	464	472	anti-parallel
Strand 4	C	417	421	anti-parallel
Strand 5	C	562	570	anti-parallel
Strand 6	C	574	584	anti-parallel
Strand 7	C	523	533	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	111	113	anti-parallel

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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	176	first strand
Strand 2	D	208	211	anti-parallel
Strand 3	D	255	259	parallel
Strand 4	D	231	235	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	270	first strand
Strand 2	D	275	279	anti-parallel
Strand 3	D	373	380	anti-parallel
Strand 4	D	333	340	anti-parallel
Strand 5	D	343	345	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	297	first strand
Strand 2	D	382	383	anti-parallel

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There are 7 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	495	first strand
Strand 2	D	387	395	anti-parallel
Strand 3	D	464	472	anti-parallel
Strand 4	D	417	421	anti-parallel
Strand 5	D	562	571	anti-parallel
Strand 6	D	574	584	anti-parallel
Strand 7	D	523	533	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BBY