Analysis of interatomic Contacts of Structural Units in PDB entry:
4BD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BD4 entry

There are 9 chains in PDB entry 4BD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 109
B
 ALA 1ALA 109
C
 THR 2ALA 109
D
 ALA 1ALA 109
E
 ALA 1ALA 109
F
 ALA 1ALA 109
G
 THR 2ILE 108
H
 ALA 1GLN 110
I
 ALA 1ALA 109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 4BD4

There are 11 sheets in PDB entry 4BD4. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, DB, EA, FA, GA, HA, HB, IA,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
42 47anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
100 107anti-parallel
Strand 5
A
2 8anti-parallel
Strand 6
A
15 22anti-parallel
Strand 7
A
29 36anti-parallel
Strand 8
A
65 71anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
42 47anti-parallel
Strand 3
B
86 91anti-parallel
Strand 4
B
100 108anti-parallel
Strand 5
B
2 8anti-parallel
Strand 6
B
15 22anti-parallel
Strand 7
B
29 36anti-parallel
Strand 8
B
65 71anti-parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 59first strand
Strand 2
C
41 47anti-parallel
Strand 3
C
86 91anti-parallel
Strand 4
C
100 108anti-parallel
Strand 5
C
3 8anti-parallel
Strand 6
C
15 22anti-parallel
Strand 7
C
29 36anti-parallel
Strand 8
C
65 71anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
64 71first strand
Strand 2
D
29 36anti-parallel
Strand 3
D
15 22anti-parallel
Strand 4
D
2 9anti-parallel
Strand 5
D
107 108anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 57first strand
Strand 2
D
43 47anti-parallel
Strand 3
D
86 91anti-parallel
Strand 4
D
100 105anti-parallel
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There are 8 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 58first strand
Strand 2
E
42 47anti-parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
100 108anti-parallel
Strand 5
E
2 8anti-parallel
Strand 6
E
15 22anti-parallel
Strand 7
E
29 36anti-parallel
Strand 8
E
65 71anti-parallel
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There are 8 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
57 58first strand
Strand 2
F
42 47anti-parallel
Strand 3
F
86 91anti-parallel
Strand 4
F
102 108anti-parallel
Strand 5
F
2 9anti-parallel
Strand 6
F
15 22anti-parallel
Strand 7
F
29 36anti-parallel
Strand 8
F
65 71anti-parallel
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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
43 47first strand
Strand 2
G
86 91anti-parallel
Strand 3
G
100 107anti-parallel
Strand 4
G
3 9anti-parallel
Strand 5
G
15 21anti-parallel
Strand 6
G
29 36anti-parallel
Strand 7
G
65 71anti-parallel
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There are 5 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
65 71first strand
Strand 2
H
29 36anti-parallel
Strand 3
H
15 22anti-parallel
Strand 4
H
2 8anti-parallel
Strand 5
H
107 108anti-parallel
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There are 4 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
53 57first strand
Strand 2
H
43 47anti-parallel
Strand 3
H
86 90anti-parallel
Strand 4
H
102 105anti-parallel
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There are 7 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
44 47first strand
Strand 2
I
86 90anti-parallel
Strand 3
I
100 108anti-parallel
Strand 4
I
2 8anti-parallel
Strand 5
I
15 22anti-parallel
Strand 6
I
29 36anti-parallel
Strand 7
I
65 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il