Analysis of interatomic Contacts of Structural Units in PDB entry:
4BDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BDA entry

There is 1 chain in PDB entry 4BDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 209LEU 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4BDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
213 219Right-handed alpha
Helix 2
2
A
269 280Right-handed alpha
Helix 3
3
A
309 314Right-handed alpha
Helix 4
4
A
320 341Right-handed alpha
Helix 5
5
A
349 351Right-handed 310
Helix 6
6
A
368 372Right-handed 310
Helix 7
7
A
377 386Right-handed alpha
Helix 8
8
A
387 391Right-handed 310
Helix 9
9
A
392 398Right-handed alpha
Helix 10
10
A
399 401Right-handed 310
Helix 11
11
A
406 423Right-handed alpha
Helix 12
12
A
435 443Right-handed alpha
Helix 13
13
A
448 453Right-handed alpha
Helix 14
14
A
456 467Right-handed alpha
Helix 15
15
A
476 482Right-handed alpha
Helix 16
16
A
483 487Right-handed 310
Helix 17
17
A
488 504Right-handed alpha
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There are 3 sheets in PDB entry 4BDA. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 227first strand
Strand 2
A
234 239anti-parallel
Strand 3
A
245 252anti-parallel
Strand 4
A
296 301anti-parallel
Strand 5
A
288 293anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
353 355anti-parallel
Strand 3
A
364 366anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
373 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il