Analysis of interatomic Contacts of Structural Units in PDB entry:
4BDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BDF entry

There is 1 chain in PDB entry 4BDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 209LEU 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4BDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
213 219Right-handed alpha
Helix 2
2
A
269 280Right-handed alpha
Helix 3
3
A
309 314Right-handed alpha
Helix 4
4
A
320 341Right-handed alpha
Helix 5
5
A
349 351Right-handed 310
Helix 6
6
A
378 385Right-handed alpha
Helix 7
7
A
392 399Right-handed alpha
Helix 8
8
A
406 423Right-handed alpha
Helix 9
9
A
435 443Right-handed alpha
Helix 10
10
A
448 453Right-handed alpha
Helix 11
11
A
456 467Right-handed alpha
Helix 12
12
A
476 483Right-handed alpha
Helix 13
13
A
484 487Right-handed 310
Helix 14
14
A
488 504Right-handed alpha
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There are 3 sheets in PDB entry 4BDF. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
233 239anti-parallel
Strand 3
A
244 252anti-parallel
Strand 4
A
296 301anti-parallel
Strand 5
A
288 293anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
353 355anti-parallel
Strand 3
A
364 366anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
373 374anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il