Analysis of interatomic Contacts of Structural Units in PDB entry:
4BDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BDV entry

There are 2 chains in PDB entry 4BDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	LYS 713
B	LYS 1693	TYR 2332

There are 14 helices in PDB entry 4BDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	119	123	Right-handed 310
Helix 2	2	A	164	172	Right-handed alpha
Helix 3	3	A	312	316	Right-handed 310
Helix 4	4	A	516	520	Right-handed 310
Helix 5	5	A	540	545	Right-handed alpha
Helix 6	6	A	582	584	Right-handed 310
Helix 7	7	A	586	592	Right-handed alpha
Helix 8	8	A	605	611	Right-handed alpha
Helix 9	9	A	696	700	Right-handed 310
Helix 10	10	B	1820	1824	Right-handed 310
Helix 11	11	B	1844	1849	Right-handed alpha
Helix 12	12	B	2002	2007	Right-handed alpha
Helix 13	13	B	2186	2188	Right-handed 310
Helix 14	14	B	2204	2208	Right-handed 310

There are 31 sheets in PDB entry 4BDV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, BN, BO,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	83	88	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	83	88	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	83	88	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	49	50	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	79	first strand
Strand 2	A	173	179	parallel
Strand 3	A	153	159	anti-parallel
Strand 4	A	99	101	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	195	first strand
Strand 2	A	253	260	parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	253	260	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	297	first strand
Strand 2	A	253	260	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	304	310	anti-parallel
Strand 3	A	321	326	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	281	283	anti-parallel

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There are 5 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	431	first strand
Strand 2	A	381	394	anti-parallel
Strand 3	A	460	468	parallel
Strand 4	A	508	514	anti-parallel
Strand 5	A	482	485	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	456	first strand
Strand 2	A	548	554	parallel
Strand 3	A	529	534	anti-parallel
Strand 4	A	476	478	anti-parallel

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There are 4 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	617	first strand
Strand 2	A	572	580	anti-parallel
Strand 3	A	635	641	parallel
Strand 4	A	675	680	anti-parallel

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There are 3 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	629	first strand
Strand 2	A	704	708	parallel
Strand 3	A	686	690	anti-parallel

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There are 2 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	650	first strand
Strand 2	A	669	670	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	658	659	first strand
Strand 2	A	664	665	anti-parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1731	1737	first strand
Strand 2	B	1695	1706	anti-parallel
Strand 3	B	1770	1777	parallel
Strand 4	B	1811	1818	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1763	1766	first strand
Strand 2	B	1852	1858	parallel
Strand 3	B	1832	1838	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1874	1880	first strand
Strand 2	B	1940	1946	parallel
Strand 3	B	1984	1988	anti-parallel
Strand 4	B	1963	1965	anti-parallel
Strand 5	B	1971	1973	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1883	1884	first strand
Strand 2	B	1917	1918	anti-parallel

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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1933	1935	first strand
Strand 2	B	2012	2017	parallel
Strand 3	B	1994	2000	anti-parallel
Strand 4	B	1955	1958	anti-parallel
Strand 5	B	1975	1977	anti-parallel

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There are 6 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2023	2024	first strand
Strand 2	B	2164	2169	anti-parallel
Strand 3	B	2071	2086	parallel
Strand 4	B	2137	2156	anti-parallel
Strand 5	B	2095	2106	anti-parallel
Strand 6	B	2113	2114	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2023	2024	first strand
Strand 2	B	2164	2169	anti-parallel
Strand 3	B	2071	2086	parallel
Strand 4	B	2037	2039	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2088	2090	first strand
Strand 2	B	2095	2106	anti-parallel

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There are 6 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2023	2024	first strand
Strand 2	B	2164	2169	anti-parallel
Strand 3	B	2071	2086	parallel
Strand 4	B	2137	2156	anti-parallel
Strand 5	B	2095	2106	anti-parallel
Strand 6	B	2125	2127	anti-parallel

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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2113	2114	first strand
Strand 2	B	2095	2106	anti-parallel

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There are 6 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2023	2024	first strand
Strand 2	B	2164	2169	anti-parallel
Strand 3	B	2071	2086	parallel
Strand 4	B	2137	2156	anti-parallel
Strand 5	B	2095	2106	anti-parallel
Strand 6	B	2088	2090	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2062	2064	first strand
Strand 2	B	2160	2162	anti-parallel

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There are 6 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2176	2177	first strand
Strand 2	B	2321	2327	anti-parallel
Strand 3	B	2230	2245	parallel
Strand 4	B	2293	2312	anti-parallel
Strand 5	B	2259	2265	anti-parallel
Strand 6	B	2282	2284	anti-parallel

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There are 4 strands in BN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2176	2177	first strand
Strand 2	B	2321	2327	anti-parallel
Strand 3	B	2230	2245	parallel
Strand 4	B	2190	2192	anti-parallel

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There are 2 strands in BO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2247	2249	first strand
Strand 2	B	2254	2256	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BDV