Analysis of interatomic Contacts of Structural Units in PDB entry:
4BE9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BE9 entry

There are 2 chains in PDB entry 4BE9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 12	ILE 549
B	THR 13	ILE 549

There are 49 helices in PDB entry 4BE9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	45	49	Right-handed 310
Helix 2	2	A	83	93	Right-handed alpha
Helix 3	3	A	95	102	Right-handed alpha
Helix 4	4	A	140	144	Right-handed 310
Helix 5	5	A	146	156	Right-handed alpha
Helix 6	6	A	169	174	Right-handed alpha
Helix 7	7	A	177	184	Right-handed alpha
Helix 8	8	A	187	204	Right-handed alpha
Helix 9	9	A	205	207	Right-handed 310
Helix 10	10	A	220	236	Right-handed alpha
Helix 11	11	A	263	277	Right-handed alpha
Helix 12	12	A	284	290	Right-handed alpha
Helix 13	13	A	293	302	Right-handed alpha
Helix 14	14	A	329	336	Right-handed alpha
Helix 15	15	A	354	358	Right-handed 310
Helix 16	16	A	365	377	Right-handed alpha
Helix 17	17	A	382	392	Right-handed alpha
Helix 18	18	A	396	400	Right-handed 310
Helix 19	19	A	414	427	Right-handed alpha
Helix 20	20	A	427	442	Right-handed alpha
Helix 21	21	A	466	472	Right-handed alpha
Helix 22	22	A	479	496	Right-handed alpha
Helix 23	23	A	510	515	Right-handed alpha
Helix 24	24	A	533	543	Right-handed alpha
Helix 25	25	A	544	548	Right-handed 310
Helix 26	26	B	45	49	Right-handed 310
Helix 27	27	B	83	94	Right-handed alpha
Helix 28	28	B	95	102	Right-handed alpha
Helix 29	29	B	140	144	Right-handed 310
Helix 30	30	B	146	157	Right-handed alpha
Helix 31	31	B	169	174	Right-handed alpha
Helix 32	32	B	177	183	Right-handed alpha
Helix 33	33	B	187	204	Right-handed alpha
Helix 34	34	B	205	207	Right-handed 310
Helix 35	35	B	220	236	Right-handed alpha
Helix 36	36	B	263	277	Right-handed alpha
Helix 37	37	B	284	290	Right-handed alpha
Helix 38	38	B	293	302	Right-handed alpha
Helix 39	39	B	329	336	Right-handed alpha
Helix 40	40	B	353	358	Right-handed alpha
Helix 41	41	B	365	377	Right-handed alpha
Helix 42	42	B	382	391	Right-handed alpha
Helix 43	43	B	414	427	Right-handed alpha
Helix 44	44	B	427	442	Right-handed alpha
Helix 45	45	B	466	472	Right-handed alpha
Helix 46	46	B	479	496	Right-handed alpha
Helix 47	47	B	510	515	Right-handed alpha
Helix 48	48	B	533	543	Right-handed alpha
Helix 49	49	B	544	548	Right-handed 310

There are 10 sheets in PDB entry 4BE9. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	19	first strand
Strand 2	A	22	29	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	22	29	parallel

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There are 12 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	529	first strand
Strand 2	A	516	520	anti-parallel
Strand 3	A	447	452	parallel
Strand 4	A	344	349	parallel
Strand 5	A	247	251	parallel
Strand 6	A	209	219	parallel
Strand 7	A	125	131	parallel
Strand 8	A	161	165	parallel
Strand 9	A	110	116	anti-parallel
Strand 10	A	32	39	anti-parallel
Strand 11	A	22	29	anti-parallel
Strand 12	A	62	64	parallel

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There are 12 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	529	first strand
Strand 2	A	516	520	anti-parallel
Strand 3	A	447	452	parallel
Strand 4	A	344	349	parallel
Strand 5	A	247	251	parallel
Strand 6	A	209	219	parallel
Strand 7	A	125	131	parallel
Strand 8	A	161	165	parallel
Strand 9	A	110	116	anti-parallel
Strand 10	A	32	39	anti-parallel
Strand 11	A	22	29	anti-parallel
Strand 12	A	13	19	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	242	243	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	19	first strand
Strand 2	B	22	29	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	22	29	parallel

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There are 12 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	529	first strand
Strand 2	B	516	520	anti-parallel
Strand 3	B	447	452	parallel
Strand 4	B	344	349	parallel
Strand 5	B	247	251	parallel
Strand 6	B	209	219	parallel
Strand 7	B	125	131	parallel
Strand 8	B	161	165	parallel
Strand 9	B	110	116	anti-parallel
Strand 10	B	32	39	anti-parallel
Strand 11	B	22	29	anti-parallel
Strand 12	B	62	64	parallel

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There are 12 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	529	first strand
Strand 2	B	516	520	anti-parallel
Strand 3	B	447	452	parallel
Strand 4	B	344	349	parallel
Strand 5	B	247	251	parallel
Strand 6	B	209	219	parallel
Strand 7	B	125	131	parallel
Strand 8	B	161	165	parallel
Strand 9	B	110	116	anti-parallel
Strand 10	B	32	39	anti-parallel
Strand 11	B	22	29	anti-parallel
Strand 12	B	14	19	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	239	first strand
Strand 2	B	242	243	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BE9

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BE9