Analysis of interatomic Contacts of Structural Units in PDB entry:
4BER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BER entry

There are 2 chains in PDB entry 4BER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1THR 477
B
 GLY 1GLU 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 4BER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 17Right-handed alpha
Helix 2
2
A
18 26Right-handed 310
Helix 3
3
A
28 30Right-handed 310
Helix 4
4
A
31 36Right-handed alpha
Helix 5
5
A
38 45Right-handed alpha
Helix 6
6
A
47 66Right-handed alpha
Helix 7
7
A
73 84Right-handed alpha
Helix 8
8
A
88 93Right-handed alpha
Helix 9
9
A
110 113Right-handed 310
Helix 10
10
A
115 125Right-handed alpha
Helix 11
11
A
125 131Right-handed alpha
Helix 12
12
A
156 158Right-handed 310
Helix 13
13
A
159 175Right-handed alpha
Helix 14
14
A
189 207Right-handed alpha
Helix 15
15
A
210 228Right-handed alpha
Helix 16
16
A
234 240Right-handed alpha
Helix 17
17
A
244 251Right-handed alpha
Helix 18
18
A
268 292Right-handed alpha
Helix 19
19
A
297 301Right-handed 310
Helix 20
20
A
304 315Right-handed alpha
Helix 21
21
A
317 325Right-handed alpha
Helix 22
22
A
333 345Right-handed alpha
Helix 23
23
A
346 348Right-handed 310
Helix 24
24
A
351 360Right-handed alpha
Helix 25
25
A
362 371Right-handed alpha
Helix 26
26
A
374 379Right-handed alpha
Helix 27
27
A
394 403Right-handed alpha
Helix 28
28
A
404 414Right-handed alpha
Helix 29
29
A
427 435Right-handed alpha
Helix 30
30
A
437 449Right-handed alpha
Helix 31
31
A
453 459Right-handed alpha
Helix 32
32
A
467 474Right-handed alpha
Helix 33
33
B
10 17Right-handed alpha
Helix 34
34
B
18 26Right-handed 310
Helix 35
35
B
28 30Right-handed 310
Helix 36
36
B
31 36Right-handed alpha
Helix 37
37
B
38 45Right-handed alpha
Helix 38
38
B
47 66Right-handed alpha
Helix 39
39
B
73 84Right-handed alpha
Helix 40
40
B
91 95Right-handed 310
Helix 41
41
B
110 113Right-handed 310
Helix 42
42
B
115 125Right-handed alpha
Helix 43
43
B
125 131Right-handed alpha
Helix 44
44
B
156 158Right-handed 310
Helix 45
45
B
159 175Right-handed alpha
Helix 46
46
B
189 207Right-handed alpha
Helix 47
47
B
210 228Right-handed alpha
Helix 48
48
B
234 240Right-handed alpha
Helix 49
49
B
244 251Right-handed alpha
Helix 50
50
B
268 292Right-handed alpha
Helix 51
51
B
297 301Right-handed 310
Helix 52
52
B
304 315Right-handed alpha
Helix 53
53
B
317 325Right-handed alpha
Helix 54
54
B
333 345Right-handed alpha
Helix 55
55
B
351 360Right-handed alpha
Helix 56
56
B
362 371Right-handed alpha
Helix 57
57
B
374 379Right-handed alpha
Helix 58
58
B
394 403Right-handed alpha
Helix 59
59
B
404 414Right-handed alpha
Helix 60
60
B
427 435Right-handed alpha
Helix 61
61
B
437 449Right-handed alpha
Helix 62
62
B
453 459Right-handed alpha
Helix 63
63
B
467 473Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 4BER. Click on sheet of interest to get list of strands forming it: AA, AB, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
B
2 4anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
181 184anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
146 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 109first strand
Strand 2
B
181 184anti-parallel
Strand 3
B
134 139anti-parallel
Strand 4
B
146 147anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il