Analysis of interatomic Contacts of Structural Units in PDB entry:
4BF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BF5 entry

There are 2 chains in PDB entry 4BF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22HIS 417
B
 ALA 22HIS 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 4BF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 63Right-handed alpha
Helix 2
2
A
73 79Right-handed alpha
Helix 3
3
A
81 93Right-handed alpha
Helix 4
4
A
101 111Right-handed alpha
Helix 5
5
A
124 131Right-handed alpha
Helix 6
6
A
132 135Right-handed 310
Helix 7
7
A
142 156Right-handed alpha
Helix 8
8
A
180 192Right-handed alpha
Helix 9
9
A
209 231Right-handed alpha
Helix 10
10
A
234 238Right-handed 310
Helix 11
11
A
244 251Right-handed alpha
Helix 12
12
A
252 255Right-handed 310
Helix 13
13
A
262 267Right-handed 310
Helix 14
14
A
299 303Right-handed 310
Helix 15
15
A
318 322Right-handed 310
Helix 16
16
A
379 388Right-handed alpha
Helix 17
17
A
391 402Right-handed alpha
Helix 18
18
B
47 63Right-handed alpha
Helix 19
19
B
73 79Right-handed alpha
Helix 20
20
B
81 92Right-handed alpha
Helix 21
21
B
101 111Right-handed alpha
Helix 22
22
B
124 131Right-handed alpha
Helix 23
23
B
132 135Right-handed 310
Helix 24
24
B
142 156Right-handed alpha
Helix 25
25
B
180 192Right-handed alpha
Helix 26
26
B
209 231Right-handed alpha
Helix 27
27
B
234 238Right-handed 310
Helix 28
28
B
244 251Right-handed alpha
Helix 29
29
B
252 255Right-handed 310
Helix 30
30
B
262 267Right-handed 310
Helix 31
31
B
299 303Right-handed 310
Helix 32
32
B
318 322Right-handed 310
Helix 33
33
B
379 384Right-handed alpha
Helix 34
34
B
390 402Right-handed alpha
Helix 35
35
B
408 410Right-handed 310
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There are 10 sheets in PDB entry 4BF5. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
366 373anti-parallel
Strand 3
A
280 285anti-parallel
Strand 4
A
42 47anti-parallel
Strand 5
A
404 407parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
96 99parallel
Strand 3
A
68 72parallel
Strand 4
A
258 259parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
160 165parallel
Strand 3
A
196 202parallel
Strand 4
A
239 241parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 292first strand
Strand 2
A
310 315anti-parallel
Strand 3
A
351 354anti-parallel
Strand 4
A
338 343anti-parallel
Strand 5
A
332 335anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
304 305anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 378first strand
Strand 2
B
366 373anti-parallel
Strand 3
B
280 285anti-parallel
Strand 4
B
42 46anti-parallel
Strand 5
B
404 406parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
96 99parallel
Strand 3
B
68 72parallel
Strand 4
B
258 259parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
160 165parallel
Strand 3
B
196 202parallel
Strand 4
B
239 241parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 292first strand
Strand 2
B
310 315anti-parallel
Strand 3
B
351 354anti-parallel
Strand 4
B
338 343anti-parallel
Strand 5
B
332 335anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 298first strand
Strand 2
B
304 305anti-parallel
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