Analysis of interatomic Contacts of Structural Units in PDB entry:
4BFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BFX entry

There are 2 chains in PDB entry 4BFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 7LEU 312
B
 PRO 7LEU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 4BFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
30 37Right-handed alpha
Helix 3
3
A
45 52Right-handed alpha
Helix 4
4
A
52 78Right-handed alpha
Helix 5
5
A
102 115Right-handed alpha
Helix 6
6
A
129 131Right-handed 310
Helix 7
7
A
134 141Right-handed alpha
Helix 8
8
A
143 147Right-handed 310
Helix 9
9
A
149 152Right-handed 310
Helix 10
10
A
154 168Right-handed alpha
Helix 11
11
A
213 218Right-handed 310
Helix 12
12
A
227 242Right-handed alpha
Helix 13
13
A
245 249Right-handed 310
Helix 14
14
A
254 260Right-handed 310
Helix 15
15
A
261 276Right-handed alpha
Helix 16
16
A
276 285Right-handed alpha
Helix 17
17
A
286 292Right-handed 310
Helix 18
18
B
15 20Right-handed alpha
Helix 19
19
B
32 37Right-handed alpha
Helix 20
20
B
45 52Right-handed alpha
Helix 21
21
B
52 78Right-handed alpha
Helix 22
22
B
102 115Right-handed alpha
Helix 23
23
B
129 131Right-handed 310
Helix 24
24
B
134 141Right-handed alpha
Helix 25
25
B
143 147Right-handed 310
Helix 26
26
B
149 152Right-handed 310
Helix 27
27
B
154 167Right-handed alpha
Helix 28
28
B
213 218Right-handed 310
Helix 29
29
B
227 245Right-handed alpha
Helix 30
30
B
246 249Right-handed 310
Helix 31
31
B
254 258Right-handed 310
Helix 32
32
B
261 276Right-handed alpha
Helix 33
33
B
276 285Right-handed alpha
Helix 34
34
B
286 292Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4BFX. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
304 310anti-parallel
Strand 3
A
294 298anti-parallel
Strand 4
A
220 226parallel
Strand 5
A
91 97parallel
Strand 6
A
197 201parallel
Strand 7
A
123 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 178first strand
Strand 2
A
183 192anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 14first strand
Strand 2
B
304 310anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
220 225parallel
Strand 5
B
91 97parallel
Strand 6
B
197 201parallel
Strand 7
B
123 127parallel
Back to list of sheets
Back to top of page

There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 178first strand
Strand 2
B
183 192anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il