Analysis of interatomic Contacts of Structural Units in PDB entry:
4BGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BGB entry

There are 2 chains in PDB entry 4BGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 36GLY 351
B
 LEU 37GLY 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4BGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 90Right-handed alpha
Helix 2
2
A
90 103Right-handed alpha
Helix 3
3
A
113 129Right-handed alpha
Helix 4
4
A
144 147Right-handed 310
Helix 5
5
A
148 156Right-handed alpha
Helix 6
6
A
191 203Right-handed alpha
Helix 7
7
A
207 209Right-handed 310
Helix 8
8
A
210 215Right-handed alpha
Helix 9
9
A
219 228Right-handed alpha
Helix 10
10
A
247 261Right-handed alpha
Helix 11
11
A
265 286Right-handed alpha
Helix 12
12
A
287 289Right-handed 310
Helix 13
13
A
297 301Right-handed 310
Helix 14
14
A
302 313Right-handed alpha
Helix 15
15
A
324 339Right-handed alpha
Helix 16
16
B
79 90Right-handed alpha
Helix 17
17
B
90 103Right-handed alpha
Helix 18
18
B
113 129Right-handed alpha
Helix 19
19
B
144 147Right-handed 310
Helix 20
20
B
148 156Right-handed alpha
Helix 21
21
B
191 203Right-handed alpha
Helix 22
22
B
207 209Right-handed 310
Helix 23
23
B
210 215Right-handed alpha
Helix 24
24
B
219 228Right-handed alpha
Helix 25
25
B
247 262Right-handed alpha
Helix 26
26
B
265 286Right-handed alpha
Helix 27
27
B
287 289Right-handed 310
Helix 28
28
B
297 301Right-handed 310
Helix 29
29
B
302 313Right-handed alpha
Helix 30
30
B
324 339Right-handed alpha
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There are 11 sheets in PDB entry 4BGB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 348first strand
Strand 2
A
132 135anti-parallel
Strand 3
A
106 111parallel
Strand 4
A
39 45parallel
Strand 5
A
50 56anti-parallel
Strand 6
A
61 67anti-parallel
Strand 7
B
61 68anti-parallel
Strand 8
B
49 56anti-parallel
Strand 9
B
39 45anti-parallel
Strand 10
B
106 111parallel
Strand 11
B
132 135parallel
Strand 12
B
345 348anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
169 176parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
169 176anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
292 296parallel
Strand 3
A
161 166parallel
Strand 4
A
169 176anti-parallel
Strand 5
A
179 180parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 319first strand
Strand 2
A
292 296parallel
Strand 3
A
161 166parallel
Strand 4
A
169 176anti-parallel
Strand 5
A
186 189anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 231first strand
Strand 2
A
234 235anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
169 176parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 189first strand
Strand 2
B
169 176anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 319first strand
Strand 2
B
292 296parallel
Strand 3
B
161 166parallel
Strand 4
B
169 176anti-parallel
Strand 5
B
179 180parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 319first strand
Strand 2
B
292 296parallel
Strand 3
B
161 166parallel
Strand 4
B
169 176anti-parallel
Strand 5
B
186 189anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 231first strand
Strand 2
B
234 235anti-parallel
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