Analysis of interatomic Contacts of Structural Units in PDB entry:
4BGD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BGD entry

There are 2 chains in PDB entry 4BGD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 442	LYS 2163
C	SER 2148	PHE 2395

There are 92 helices in PDB entry 4BGD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	480	483	Right-handed 310
Helix 2	2	A	486	491	Right-handed 310
Helix 3	3	A	500	512	Right-handed alpha
Helix 4	4	A	526	541	Right-handed alpha
Helix 5	5	A	563	579	Right-handed alpha
Helix 6	6	A	593	597	Right-handed 310
Helix 7	7	A	608	618	Right-handed alpha
Helix 8	8	A	621	626	Right-handed alpha
Helix 9	9	A	635	641	Right-handed 310
Helix 10	10	A	644	657	Right-handed alpha
Helix 11	11	A	658	662	Right-handed 310
Helix 12	12	A	676	684	Right-handed alpha
Helix 13	13	A	687	689	Right-handed 310
Helix 14	14	A	695	699	Right-handed 310
Helix 15	15	A	714	736	Right-handed alpha
Helix 16	16	A	746	765	Right-handed alpha
Helix 17	17	A	766	771	Right-handed alpha
Helix 18	18	A	777	788	Right-handed alpha
Helix 19	19	A	792	799	Right-handed alpha
Helix 20	20	A	809	822	Right-handed alpha
Helix 21	21	A	832	838	Right-handed alpha
Helix 22	22	A	864	872	Right-handed alpha
Helix 23	23	A	892	903	Right-handed alpha
Helix 24	24	A	915	926	Right-handed alpha
Helix 25	25	A	931	939	Right-handed alpha
Helix 26	26	A	942	951	Right-handed alpha
Helix 27	27	A	959	964	Right-handed alpha
Helix 28	28	A	966	984	Right-handed alpha
Helix 29	29	A	999	1008	Right-handed alpha
Helix 30	30	A	1011	1022	Right-handed alpha
Helix 31	31	A	1027	1037	Right-handed alpha
Helix 32	32	A	1038	1042	Right-handed 310
Helix 33	33	A	1050	1060	Right-handed alpha
Helix 34	34	A	1071	1086	Right-handed alpha
Helix 35	35	A	1091	1120	Right-handed alpha
Helix 36	36	A	1121	1137	Right-handed alpha
Helix 37	37	A	1144	1148	Right-handed 310
Helix 38	38	A	1153	1163	Right-handed alpha
Helix 39	39	A	1166	1173	Right-handed alpha
Helix 40	40	A	1175	1184	Right-handed alpha
Helix 41	41	A	1185	1198	Right-handed alpha
Helix 42	42	A	1229	1234	Right-handed alpha
Helix 43	43	A	1277	1283	Right-handed alpha
Helix 44	44	A	1331	1334	Right-handed 310
Helix 45	45	A	1336	1344	Right-handed alpha
Helix 46	46	A	1349	1361	Right-handed alpha
Helix 47	47	A	1375	1389	Right-handed alpha
Helix 48	48	A	1401	1417	Right-handed alpha
Helix 49	49	A	1431	1442	Right-handed alpha
Helix 50	50	A	1448	1457	Right-handed alpha
Helix 51	51	A	1462	1467	Right-handed alpha
Helix 52	52	A	1475	1481	Right-handed 310
Helix 53	53	A	1482	1503	Right-handed alpha
Helix 54	54	A	1517	1525	Right-handed alpha
Helix 55	55	A	1528	1530	Right-handed 310
Helix 56	56	A	1536	1540	Right-handed 310
Helix 57	57	A	1560	1577	Right-handed alpha
Helix 58	58	A	1587	1604	Right-handed alpha
Helix 59	59	A	1616	1622	Right-handed alpha
Helix 60	60	A	1626	1628	Right-handed 310
Helix 61	61	A	1629	1634	Right-handed alpha
Helix 62	62	A	1645	1659	Right-handed alpha
Helix 63	63	A	1669	1673	Right-handed 310
Helix 64	64	A	1699	1708	Right-handed alpha
Helix 65	65	A	1725	1736	Right-handed alpha
Helix 66	66	A	1745	1748	Right-handed 310
Helix 67	67	A	1749	1760	Right-handed alpha
Helix 68	68	A	1766	1775	Right-handed alpha
Helix 69	69	A	1776	1785	Right-handed alpha
Helix 70	70	A	1785	1790	Right-handed alpha
Helix 71	71	A	1795	1817	Right-handed alpha
Helix 72	72	A	1847	1857	Right-handed alpha
Helix 73	73	A	1859	1870	Right-handed alpha
Helix 74	74	A	1875	1885	Right-handed alpha
Helix 75	75	A	1886	1892	Right-handed 310
Helix 76	76	A	1897	1909	Right-handed alpha
Helix 77	77	A	1921	1935	Right-handed alpha
Helix 78	78	A	1940	1968	Right-handed alpha
Helix 79	79	A	1972	1986	Right-handed alpha
Helix 80	80	A	1992	1997	Right-handed 310
Helix 81	81	A	2001	2011	Right-handed alpha
Helix 82	82	A	2015	2022	Right-handed alpha
Helix 83	83	A	2023	2031	Right-handed alpha
Helix 84	84	A	2034	2048	Right-handed alpha
Helix 85	85	C	2150	2159	Right-handed alpha
Helix 86	86	C	2160	2167	Right-handed 310
Helix 87	87	C	2187	2196	Right-handed alpha
Helix 88	88	C	2270	2282	Right-handed alpha
Helix 89	89	C	2308	2318	Right-handed alpha
Helix 90	90	C	2330	2332	Right-handed 310
Helix 91	91	C	2384	2389	Right-handed 310
Helix 92	92	C	2390	2395	Right-handed alpha

There are 18 sheets in PDB entry 4BGD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, CA, CB, CC, CD, CE, CF,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	456	first strand
Strand 2	A	460	465	anti-parallel
Strand 3	A	703	710	anti-parallel
Strand 4	A	884	891	parallel
Strand 5	A	844	848	parallel
Strand 6	A	740	743	parallel
Strand 7	A	827	830	parallel
Strand 8	A	801	804	parallel

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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	587	first strand
Strand 2	A	604	607	parallel
Strand 3	A	556	560	parallel
Strand 4	A	628	633	parallel
Strand 5	A	666	672	parallel
Strand 6	A	517	521	parallel
Strand 7	A	691	693	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	851	854	first strand
Strand 2	A	859	862	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	987	990	first strand
Strand 2	A	995	998	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1202	1210	first strand
Strand 2	A	1215	1224	anti-parallel
Strand 3	A	1267	1275	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1251	1259	first strand
Strand 2	A	1237	1244	anti-parallel
Strand 3	A	1287	1294	anti-parallel
Strand 4	A	1301	1307	anti-parallel

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There are 7 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1424	1426	first strand
Strand 2	A	1444	1447	parallel
Strand 3	A	1395	1398	parallel
Strand 4	A	1470	1473	parallel
Strand 5	A	1507	1512	parallel
Strand 6	A	1366	1369	parallel
Strand 7	A	1532	1534	parallel

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There are 6 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1544	1549	first strand
Strand 2	A	1718	1723	parallel
Strand 3	A	1679	1683	parallel
Strand 4	A	1581	1585	parallel
Strand 5	A	1663	1667	parallel
Strand 6	A	1637	1640	parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1686	1689	first strand
Strand 2	A	1694	1697	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1820	1823	first strand
Strand 2	A	1843	1846	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2052	2057	first strand
Strand 2	A	2068	2076	anti-parallel
Strand 3	A	2123	2131	anti-parallel

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There are 4 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2110	2117	first strand
Strand 2	A	2099	2105	anti-parallel
Strand 3	A	2136	2146	anti-parallel
Strand 4	A	2154	2162	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2169	2171	first strand
Strand 2	C	2299	2307	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2334	2336	first strand
Strand 2	C	2299	2307	parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2338	2342	first strand
Strand 2	C	2182	2186	parallel
Strand 3	C	2218	2226	parallel
Strand 4	C	2348	2352	anti-parallel
Strand 5	C	2374	2376	parallel

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There are 8 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2338	2342	first strand
Strand 2	C	2182	2186	parallel
Strand 3	C	2218	2226	parallel
Strand 4	C	2204	2211	anti-parallel
Strand 5	C	2254	2262	anti-parallel
Strand 6	C	2289	2296	parallel
Strand 7	C	2299	2307	anti-parallel
Strand 8	C	2334	2336	parallel

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There are 8 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2338	2342	first strand
Strand 2	C	2182	2186	parallel
Strand 3	C	2218	2226	parallel
Strand 4	C	2204	2211	anti-parallel
Strand 5	C	2254	2262	anti-parallel
Strand 6	C	2289	2296	parallel
Strand 7	C	2299	2307	anti-parallel
Strand 8	C	2169	2171	parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2229	2232	first strand
Strand 2	C	2235	2238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BGD

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BGD