Analysis of interatomic Contacts of Structural Units in PDB entry:
4BGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BGQ entry

There is 1 chain in PDB entry 4BGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9LEU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4BGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 67Right-handed alpha
Helix 2
2
A
96 103Right-handed alpha
Helix 3
3
A
108 129Right-handed alpha
Helix 4
4
A
137 139Right-handed 310
Helix 5
5
A
179 184Right-handed alpha
Helix 6
6
A
190 207Right-handed alpha
Helix 7
7
A
215 228Right-handed alpha
Helix 8
8
A
231 241Right-handed alpha
Helix 9
9
A
242 245Right-handed 310
Helix 10
10
A
257 263Right-handed alpha
Helix 11
11
A
267 278Right-handed alpha
Helix 12
12
A
281 285Right-handed 310
Helix 13
13
A
287 293Right-handed alpha
Helix 14
14
A
294 299Right-handed alpha
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There are 3 sheets in PDB entry 4BGQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 21first strand
Strand 2
A
26 32anti-parallel
Strand 3
A
38 43anti-parallel
Strand 4
A
84 90anti-parallel
Strand 5
A
75 81anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
141 143anti-parallel
Strand 3
A
149 151anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
158 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il