Analysis of interatomic Contacts of Structural Units in PDB entry:
4BHD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BHD entry

There are 2 chains in PDB entry 4BHD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3TYR 429
B
 MET 2TYR 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4BHD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 23Right-handed alpha
Helix 2
2
A
35 44Right-handed alpha
Helix 3
3
A
64 82Right-handed alpha
Helix 4
4
A
92 105Right-handed alpha
Helix 5
5
A
121 125Right-handed 310
Helix 6
6
A
150 162Right-handed alpha
Helix 7
7
A
178 190Right-handed alpha
Helix 8
8
A
200 206Right-handed alpha
Helix 9
9
A
211 215Right-handed 310
Helix 10
10
A
239 250Right-handed alpha
Helix 11
11
A
261 297Right-handed alpha
Helix 12
12
A
304 308Right-handed 310
Helix 13
13
A
328 339Right-handed alpha
Helix 14
14
A
366 372Right-handed alpha
Helix 15
15
A
375 391Right-handed alpha
Helix 16
16
A
395 409Right-handed alpha
Helix 17
17
B
4 23Right-handed alpha
Helix 18
18
B
35 42Right-handed alpha
Helix 19
19
B
63 82Right-handed alpha
Helix 20
20
B
92 103Right-handed alpha
Helix 21
21
B
115 120Right-handed alpha
Helix 22
22
B
154 160Right-handed alpha
Helix 23
23
B
185 190Right-handed alpha
Helix 24
24
B
200 206Right-handed alpha
Helix 25
25
B
211 215Right-handed 310
Helix 26
26
B
245 249Right-handed 310
Helix 27
27
B
260 276Right-handed alpha
Helix 28
28
B
276 298Right-handed alpha
Helix 29
29
B
328 339Right-handed alpha
Helix 30
30
B
366 372Right-handed alpha
Helix 31
31
B
375 391Right-handed alpha
Helix 32
32
B
395 409Right-handed alpha
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There are 8 sheets in PDB entry 4BHD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
341 342parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 87first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
219 223anti-parallel
Strand 4
A
192 196parallel
Strand 5
A
165 168parallel
Strand 6
A
111 113parallel
Strand 7
A
137 139parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
148 149anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 318first strand
Strand 2
A
361 365anti-parallel
Strand 3
A
344 346anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
341 342parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 87first strand
Strand 2
B
236 238anti-parallel
Strand 3
B
219 221anti-parallel
Strand 4
B
192 196parallel
Strand 5
B
165 167parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
148 149anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 318first strand
Strand 2
B
361 365anti-parallel
Strand 3
B
344 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il