Analysis of interatomic Contacts of Structural Units in PDB entry:
4BIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BIJ entry

There are 5 chains in PDB entry 4BIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 476
B
 MET 1VAL 476
C
 MET 1VAL 476
D
 MET 1VAL 476
E
 MET 1VAL 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 4BIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 11Right-handed alpha
Helix 2
2
A
12 20Right-handed alpha
Helix 3
3
A
36 46Right-handed alpha
Helix 4
4
A
63 78Right-handed alpha
Helix 5
5
A
92 106Right-handed alpha
Helix 6
6
A
145 151Right-handed alpha
Helix 7
7
A
167 180Right-handed alpha
Helix 8
8
A
182 189Right-handed alpha
Helix 9
9
A
206 217Right-handed alpha
Helix 10
10
A
229 233Right-handed 310
Helix 11
11
A
244 252Right-handed alpha
Helix 12
12
A
257 262Right-handed alpha
Helix 13
13
A
276 281Right-handed alpha
Helix 14
14
A
349 361Right-handed alpha
Helix 15
15
A
371 381Right-handed alpha
Helix 16
16
A
407 423Right-handed alpha
Helix 17
17
A
431 438Right-handed alpha
Helix 18
18
A
455 470Right-handed alpha
Helix 19
19
A
471 474Right-handed 310
Helix 20
20
B
1 11Right-handed alpha
Helix 21
21
B
12 20Right-handed alpha
Helix 22
22
B
36 46Right-handed alpha
Helix 23
23
B
63 78Right-handed alpha
Helix 24
24
B
92 106Right-handed alpha
Helix 25
25
B
145 151Right-handed alpha
Helix 26
26
B
167 180Right-handed alpha
Helix 27
27
B
182 189Right-handed alpha
Helix 28
28
B
206 217Right-handed alpha
Helix 29
29
B
229 233Right-handed 310
Helix 30
30
B
244 252Right-handed alpha
Helix 31
31
B
257 262Right-handed alpha
Helix 32
32
B
276 281Right-handed alpha
Helix 33
33
B
349 361Right-handed alpha
Helix 34
34
B
371 381Right-handed alpha
Helix 35
35
B
407 423Right-handed alpha
Helix 36
36
B
431 438Right-handed alpha
Helix 37
37
B
455 470Right-handed alpha
Helix 38
38
B
471 474Right-handed 310
Helix 39
39
C
1 11Right-handed alpha
Helix 40
40
C
12 20Right-handed alpha
Helix 41
41
C
36 46Right-handed alpha
Helix 42
42
C
63 78Right-handed alpha
Helix 43
43
C
92 106Right-handed alpha
Helix 44
44
C
145 151Right-handed alpha
Helix 45
45
C
167 180Right-handed alpha
Helix 46
46
C
182 189Right-handed alpha
Helix 47
47
C
206 217Right-handed alpha
Helix 48
48
C
229 233Right-handed 310
Helix 49
49
C
244 252Right-handed alpha
Helix 50
50
C
257 262Right-handed alpha
Helix 51
51
C
276 281Right-handed alpha
Helix 52
52
C
349 361Right-handed alpha
Helix 53
53
C
371 381Right-handed alpha
Helix 54
54
C
407 423Right-handed alpha
Helix 55
55
C
431 438Right-handed alpha
Helix 56
56
C
455 470Right-handed alpha
Helix 57
57
C
471 474Right-handed 310
Helix 58
58
D
1 11Right-handed alpha
Helix 59
59
D
12 20Right-handed alpha
Helix 60
60
D
36 46Right-handed alpha
Helix 61
61
D
63 78Right-handed alpha
Helix 62
62
D
92 106Right-handed alpha
Helix 63
63
D
145 151Right-handed alpha
Helix 64
64
D
167 180Right-handed alpha
Helix 65
65
D
182 189Right-handed alpha
Helix 66
66
D
206 217Right-handed alpha
Helix 67
67
D
229 233Right-handed 310
Helix 68
68
D
244 252Right-handed alpha
Helix 69
69
D
257 262Right-handed alpha
Helix 70
70
D
276 281Right-handed alpha
Helix 71
71
D
349 361Right-handed alpha
Helix 72
72
D
371 381Right-handed alpha
Helix 73
73
D
407 423Right-handed alpha
Helix 74
74
D
431 438Right-handed alpha
Helix 75
75
D
455 470Right-handed alpha
Helix 76
76
D
471 474Right-handed 310
Helix 77
77
E
1 11Right-handed alpha
Helix 78
78
E
12 20Right-handed alpha
Helix 79
79
E
36 46Right-handed alpha
Helix 80
80
E
63 78Right-handed alpha
Helix 81
81
E
92 106Right-handed alpha
Helix 82
82
E
145 151Right-handed alpha
Helix 83
83
E
167 180Right-handed alpha
Helix 84
84
E
182 189Right-handed alpha
Helix 85
85
E
206 217Right-handed alpha
Helix 86
86
E
229 233Right-handed 310
Helix 87
87
E
244 252Right-handed alpha
Helix 88
88
E
257 262Right-handed alpha
Helix 89
89
E
276 281Right-handed alpha
Helix 90
90
E
349 361Right-handed alpha
Helix 91
91
E
371 381Right-handed alpha
Helix 92
92
E
407 423Right-handed alpha
Helix 93
93
E
431 438Right-handed alpha
Helix 94
94
E
455 470Right-handed alpha
Helix 95
95
E
471 474Right-handed 310
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There are 30 sheets in PDB entry 4BIJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF, A, DB, C, DD, DE, DF, EA, EB, EC, ED, EE, EF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
196 200parallel
Strand 3
A
154 160parallel
Strand 4
A
84 88parallel
Strand 5
A
135 139parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
333 341anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
366 370parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 403first strand
Strand 2
A
366 370parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 427first strand
Strand 2
A
333 341anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 443first strand
Strand 2
A
446 449anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
196 200parallel
Strand 3
B
154 160parallel
Strand 4
B
84 88parallel
Strand 5
B
135 139parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 297first strand
Strand 2
B
333 341anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
366 370parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 403first strand
Strand 2
B
366 370parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
426 427first strand
Strand 2
B
333 341anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 443first strand
Strand 2
B
446 449anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 57first strand
Strand 2
C
196 200parallel
Strand 3
C
154 160parallel
Strand 4
C
84 88parallel
Strand 5
C
135 139parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
295 297first strand
Strand 2
C
333 341anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
392 393first strand
Strand 2
C
366 370parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
402 403first strand
Strand 2
C
366 370parallel
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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
426 427first strand
Strand 2
C
333 341anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
440 443first strand
Strand 2
C
446 449anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 57first strand
Strand 2
D
196 200parallel
Strand 3
D
154 160parallel
Strand 4
D
84 88parallel
Strand 5
D
135 139parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
295 297first strand
Strand 2
D
333 341anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
392 393first strand
Strand 2
D
366 370parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
402 403first strand
Strand 2
D
366 370parallel
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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
426 427first strand
Strand 2
D
333 341anti-parallel
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There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
440 443first strand
Strand 2
D
446 449anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 57first strand
Strand 2
E
196 200parallel
Strand 3
E
154 160parallel
Strand 4
E
84 88parallel
Strand 5
E
135 139parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
295 297first strand
Strand 2
E
333 341anti-parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
392 393first strand
Strand 2
E
366 370parallel
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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
402 403first strand
Strand 2
E
366 370parallel
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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
426 427first strand
Strand 2
E
333 341anti-parallel
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There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
440 443first strand
Strand 2
E
446 449anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il