Analysis of interatomic Contacts of Structural Units in PDB entry:
4BIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BIM entry

There are 2 chains in PDB entry 4BIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 36ASP 716
B
 ASP 38VAL 627
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 4BIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 47Right-handed 310
Helix 2
2
A
81 93Right-handed alpha
Helix 3
3
A
184 186Right-handed 310
Helix 4
4
A
187 196Right-handed alpha
Helix 5
5
A
210 220Right-handed alpha
Helix 6
6
A
223 232Right-handed alpha
Helix 7
7
A
233 236Right-handed 310
Helix 8
8
A
277 288Right-handed alpha
Helix 9
9
A
290 302Right-handed alpha
Helix 10
10
A
316 320Right-handed 310
Helix 11
11
A
355 360Right-handed alpha
Helix 12
12
A
379 398Right-handed alpha
Helix 13
13
A
400 405Right-handed 310
Helix 14
14
A
472 476Right-handed 310
Helix 15
15
A
479 488Right-handed alpha
Helix 16
16
A
490 506Right-handed alpha
Helix 17
17
A
510 525Right-handed alpha
Helix 18
18
A
525 537Right-handed alpha
Helix 19
19
A
580 594Right-handed alpha
Helix 20
20
A
618 622Right-handed 310
Helix 21
21
A
631 635Right-handed 310
Helix 22
22
A
636 641Right-handed 310
Helix 23
23
A
648 660Right-handed alpha
Helix 24
24
A
670 676Right-handed alpha
Helix 25
25
A
692 705Right-handed alpha
Helix 26
26
A
707 711Right-handed 310
Helix 27
27
B
38 47Right-handed 310
Helix 28
28
B
81 93Right-handed alpha
Helix 29
29
B
184 186Right-handed 310
Helix 30
30
B
187 196Right-handed alpha
Helix 31
31
B
210 220Right-handed alpha
Helix 32
32
B
223 232Right-handed alpha
Helix 33
33
B
233 236Right-handed 310
Helix 34
34
B
277 288Right-handed alpha
Helix 35
35
B
290 303Right-handed alpha
Helix 36
36
B
316 320Right-handed 310
Helix 37
37
B
355 360Right-handed alpha
Helix 38
38
B
379 398Right-handed alpha
Helix 39
39
B
400 405Right-handed 310
Helix 40
40
B
472 476Right-handed 310
Helix 41
41
B
479 488Right-handed alpha
Helix 42
42
B
490 506Right-handed alpha
Helix 43
43
B
510 525Right-handed alpha
Helix 44
44
B
525 537Right-handed alpha
Helix 45
45
B
580 594Right-handed alpha
Helix 46
46
B
618 622Right-handed 310
Helix 47
47
B
637 641Right-handed 310
Helix 48
48
B
648 660Right-handed alpha
Helix 49
49
B
670 676Right-handed alpha
Helix 50
50
B
690 705Right-handed alpha
Helix 51
51
B
707 711Right-handed 310
Helix 52
52
C
81 89Right-handed alpha
Helix 53
53
C
184 186Right-handed 310
Helix 54
54
C
187 196Right-handed alpha
Helix 55
55
C
210 220Right-handed alpha
Helix 56
56
C
223 231Right-handed alpha
Helix 57
57
C
232 236Right-handed 310
Helix 58
58
C
277 288Right-handed alpha
Helix 59
59
C
290 303Right-handed alpha
Helix 60
60
C
316 320Right-handed 310
Helix 61
61
C
355 360Right-handed alpha
Helix 62
62
C
379 397Right-handed alpha
Helix 63
63
C
400 404Right-handed 310
Helix 64
64
C
472 476Right-handed 310
Helix 65
65
C
479 488Right-handed alpha
Helix 66
66
C
490 506Right-handed alpha
Helix 67
67
C
510 525Right-handed alpha
Helix 68
68
C
525 537Right-handed alpha
Helix 69
69
C
580 590Right-handed alpha
Helix 70
70
C
618 622Right-handed 310
Helix 71
71
C
630 636Right-handed 310
Helix 72
72
C
648 660Right-handed alpha
Helix 73
73
C
669 672Right-handed 310
Helix 74
74
C
691 699Right-handed alpha
Helix 75
75
C
707 711Right-handed 310
Helix 76
76
D
81 94Right-handed alpha
Helix 77
77
D
184 186Right-handed 310
Helix 78
78
D
187 196Right-handed alpha
Helix 79
79
D
210 220Right-handed alpha
Helix 80
80
D
223 231Right-handed alpha
Helix 81
81
D
232 236Right-handed 310
Helix 82
82
D
277 288Right-handed alpha
Helix 83
83
D
290 302Right-handed alpha
Helix 84
84
D
316 320Right-handed 310
Helix 85
85
D
355 360Right-handed alpha
Helix 86
86
D
379 398Right-handed alpha
Helix 87
87
D
400 405Right-handed 310
Helix 88
88
D
472 476Right-handed 310
Helix 89
89
D
479 488Right-handed alpha
Helix 90
90
D
490 506Right-handed alpha
Helix 91
91
D
510 525Right-handed alpha
Helix 92
92
D
525 537Right-handed alpha
Helix 93
93
D
580 594Right-handed alpha
Helix 94
94
D
618 622Right-handed 310
Helix 95
95
D
631 636Right-handed 310
Helix 96
96
D
636 640Right-handed 310
Helix 97
97
D
648 659Right-handed alpha
Helix 98
98
D
670 676Right-handed alpha
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There are 11 sheets in PDB entry 4BIM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, CA, CB, CC, A, DB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
B
467 468anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 114first strand
Strand 2
A
133 141anti-parallel
Strand 3
A
158 165anti-parallel
Strand 4
A
168 175anti-parallel
Strand 5
A
245 246anti-parallel
Strand 6
A
260 269anti-parallel
Strand 7
A
307 315anti-parallel
Strand 8
A
342 351anti-parallel
Strand 9
A
105 114first strand
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
B
70 71anti-parallel
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There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
598 603parallel
Strand 3
A
570 574parallel
Strand 4
A
624 627parallel
Strand 5
A
664 667parallel
Strand 6
A
687 689parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 114first strand
Strand 2
B
133 141anti-parallel
Strand 3
B
158 165anti-parallel
Strand 4
B
168 175anti-parallel
Strand 5
B
245 246anti-parallel
Strand 6
B
260 269anti-parallel
Strand 7
B
307 315anti-parallel
Strand 8
B
342 351anti-parallel
Strand 9
B
105 114first strand
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
612 613first strand
Strand 2
B
599 603parallel
Strand 3
B
571 574parallel
Strand 4
B
624 627parallel
Strand 5
B
664 667parallel
Strand 6
B
687 689parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
162 163anti-parallel
Strand 3
C
133 141anti-parallel
Strand 4
C
374 375first strand
Strand 5
C
251 254anti-parallel
Strand 6
C
260 269anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
467 468first strand
Strand 2
D
70 71anti-parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
612 613first strand
Strand 2
C
598 603parallel
Strand 3
C
570 574parallel
Strand 4
C
624 627parallel
Strand 5
C
664 667parallel
Strand 6
C
687 689parallel
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There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
105 114first strand
Strand 2
D
133 141anti-parallel
Strand 3
D
158 165anti-parallel
Strand 4
D
168 175anti-parallel
Strand 5
D
245 246anti-parallel
Strand 6
D
260 269anti-parallel
Strand 7
D
307 315anti-parallel
Strand 8
D
342 351anti-parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
612 613first strand
Strand 2
D
599 603parallel
Strand 3
D
571 574parallel
Strand 4
D
624 627parallel
Strand 5
D
664 667parallel
Strand 6
D
687 689parallel
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