Analysis of interatomic Contacts of Structural Units in PDB entry:
4BIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BIP entry

There are 3 chains in PDB entry 4BIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 74ASN 277
B
 SER 1GLN 254
C
 ARG 41GLN 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4BIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
78 85Right-handed alpha
Helix 2
2
A
115 124Right-handed alpha
Helix 3
3
A
167 171Right-handed 310
Helix 4
4
A
215 223Right-handed 310
Helix 5
5
B
35 37Right-handed 310
Helix 6
6
B
56 61Right-handed alpha
Helix 7
7
B
82 89Right-handed alpha
Helix 8
8
B
91 99Right-handed alpha
Helix 9
9
B
147 152Right-handed alpha
Helix 10
10
B
172 178Right-handed 310
Helix 11
11
C
42 50Right-handed alpha
Helix 12
12
C
58 64Right-handed alpha
Helix 13
13
C
64 70Right-handed alpha
Helix 14
14
C
93 99Right-handed alpha
Helix 15
15
C
99 107Right-handed alpha
Helix 16
16
C
145 152Right-handed alpha
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There are 11 sheets in PDB entry 4BIP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, CC, CD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
250 254anti-parallel
Strand 3
A
132 136anti-parallel
Strand 4
A
188 191anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
246 247anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
232 236anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
177 181anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
258 262anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
191 195parallel
Strand 3
B
101 112anti-parallel
Strand 4
B
234 246anti-parallel
Strand 5
B
64 69anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
212 218anti-parallel
Strand 3
B
122 128anti-parallel
Strand 4
B
180 183anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 73first strand
Strand 2
C
212 229anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
164 169anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 73first strand
Strand 2
C
212 229anti-parallel
Strand 3
C
108 121anti-parallel
Strand 4
C
178 179anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 169first strand
Strand 2
C
108 121anti-parallel
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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 87first strand
Strand 2
C
193 197anti-parallel
Strand 3
C
131 136anti-parallel
Strand 4
C
154 157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il