Analysis of interatomic Contacts of Structural Units in PDB entry:
4BIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BIV entry

There are 2 chains in PDB entry 4BIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 188ARG 456
B
 LYS 188ARG 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 4BIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
188 201Right-handed alpha
Helix 2
2
A
208 213Right-handed 310
Helix 3
3
A
218 268Right-handed alpha
Helix 4
4
A
271 302Right-handed alpha
Helix 5
5
A
310 328Right-handed alpha
Helix 6
6
A
346 365Right-handed alpha
Helix 7
7
A
394 399Right-handed alpha
Helix 8
8
A
407 411Right-handed 310
Helix 9
9
A
418 431Right-handed alpha
Helix 10
10
B
188 201Right-handed alpha
Helix 11
11
B
208 213Right-handed 310
Helix 12
12
B
218 268Right-handed alpha
Helix 13
13
B
271 298Right-handed alpha
Helix 14
14
B
310 328Right-handed alpha
Helix 15
15
B
346 364Right-handed alpha
Helix 16
16
B
394 399Right-handed alpha
Helix 17
17
B
408 412Right-handed 310
Helix 18
18
B
419 431Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4BIV. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
342 345anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 336first strand
Strand 2
A
368 372parallel
Strand 3
A
379 386anti-parallel
Strand 4
A
445 452anti-parallel
Strand 5
A
434 439anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 309first strand
Strand 2
B
342 345anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 336first strand
Strand 2
B
368 372parallel
Strand 3
B
379 386anti-parallel
Strand 4
B
445 452anti-parallel
Strand 5
B
434 439anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il