Analysis of interatomic Contacts of Structural Units in PDB entry:
4BJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BJ8 entry

There are 16 chains in PDB entry 4BJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	THR 122
B	SER 5	THR 122
C	SER 4	THR 122
D	SER 4	THR 122
E	SER 4	THR 122
F	SER 5	THR 122
G	SER 4	THR 122
H	SER 5	THR 122
I	SER 4	THR 122
J	SER 4	THR 122
K	VAL 3	THR 122
L	SER 4	VAL 124
M	SER 4	GLY 123
N	SER 5	THR 122
O	GLN 1	THR 122
P	SER 4	GLY 123

There are 17 helices in PDB entry 4BJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	105	109	Right-handed 310
Helix 2	2	C	105	110	Right-handed 310
Helix 3	3	D	45	47	Right-handed 310
Helix 4	4	D	104	109	Right-handed 310
Helix 5	5	E	105	110	Right-handed 310
Helix 6	6	F	105	109	Right-handed 310
Helix 7	7	G	105	109	Right-handed 310
Helix 8	8	H	104	110	Right-handed 310
Helix 9	9	J	107	110	Right-handed 310
Helix 10	10	K	105	110	Right-handed 310
Helix 11	11	L	45	47	Right-handed 310
Helix 12	12	L	104	110	Right-handed 310
Helix 13	13	M	45	47	Right-handed 310
Helix 14	14	M	104	109	Right-handed 310
Helix 15	15	N	105	109	Right-handed 310
Helix 16	16	O	105	110	Right-handed 310
Helix 17	17	P	104	109	Right-handed 310

There are 16 sheets in PDB entry 4BJ8. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA, KA, LA, MA, NA, OA, PA,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	14	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	28	34	anti-parallel
Strand 4	A	49	56	anti-parallel
Strand 5	A	63	69	anti-parallel
Strand 6	A	75	84	anti-parallel
Strand 7	A	90	99	anti-parallel
Strand 8	A	112	121	anti-parallel
Strand 9	A	10	14	anti-parallel

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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	28	34	anti-parallel
Strand 4	B	49	56	anti-parallel
Strand 5	B	63	69	anti-parallel
Strand 6	B	75	84	anti-parallel
Strand 7	B	90	99	anti-parallel
Strand 8	B	112	121	anti-parallel
Strand 9	B	10	14	anti-parallel

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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	28	34	anti-parallel
Strand 4	C	49	56	anti-parallel
Strand 5	C	63	69	anti-parallel
Strand 6	C	75	84	anti-parallel
Strand 7	C	90	99	anti-parallel
Strand 8	C	112	121	anti-parallel
Strand 9	C	10	14	anti-parallel

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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	28	34	anti-parallel
Strand 4	D	49	56	anti-parallel
Strand 5	D	63	69	anti-parallel
Strand 6	D	75	84	anti-parallel
Strand 7	D	90	99	anti-parallel
Strand 8	D	112	121	anti-parallel
Strand 9	D	10	14	anti-parallel

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There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	28	34	anti-parallel
Strand 4	E	49	56	anti-parallel
Strand 5	E	63	69	anti-parallel
Strand 6	E	75	84	anti-parallel
Strand 7	E	90	99	anti-parallel
Strand 8	E	112	121	anti-parallel
Strand 9	E	10	14	anti-parallel

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There are 9 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	28	34	anti-parallel
Strand 4	F	49	56	anti-parallel
Strand 5	F	63	69	anti-parallel
Strand 6	F	75	84	anti-parallel
Strand 7	F	90	99	anti-parallel
Strand 8	F	112	121	anti-parallel
Strand 9	F	10	14	anti-parallel

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There are 9 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	28	34	anti-parallel
Strand 4	G	49	56	anti-parallel
Strand 5	G	63	69	anti-parallel
Strand 6	G	75	84	anti-parallel
Strand 7	G	90	99	anti-parallel
Strand 8	G	112	121	anti-parallel
Strand 9	G	10	14	anti-parallel

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There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	28	34	anti-parallel
Strand 4	H	49	56	anti-parallel
Strand 5	H	63	69	anti-parallel
Strand 6	H	75	84	anti-parallel
Strand 7	H	90	99	anti-parallel
Strand 8	H	112	121	anti-parallel
Strand 9	H	10	14	anti-parallel

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There are 9 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	28	34	anti-parallel
Strand 4	I	49	56	anti-parallel
Strand 5	I	63	69	anti-parallel
Strand 6	I	75	84	anti-parallel
Strand 7	I	90	99	anti-parallel
Strand 8	I	112	121	anti-parallel
Strand 9	I	10	14	anti-parallel

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There are 9 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	28	34	anti-parallel
Strand 4	J	49	56	anti-parallel
Strand 5	J	63	69	anti-parallel
Strand 6	J	75	84	anti-parallel
Strand 7	J	90	99	anti-parallel
Strand 8	J	112	121	anti-parallel
Strand 9	J	10	14	anti-parallel

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There are 9 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	14	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	28	34	anti-parallel
Strand 4	K	49	56	anti-parallel
Strand 5	K	63	69	anti-parallel
Strand 6	K	75	84	anti-parallel
Strand 7	K	90	99	anti-parallel
Strand 8	K	112	121	anti-parallel
Strand 9	K	10	14	anti-parallel

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There are 9 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	28	34	anti-parallel
Strand 4	L	49	56	anti-parallel
Strand 5	L	63	69	anti-parallel
Strand 6	L	75	84	anti-parallel
Strand 7	L	90	99	anti-parallel
Strand 8	L	112	121	anti-parallel
Strand 9	L	10	14	anti-parallel

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There are 9 strands in MA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	19	24	anti-parallel
Strand 3	M	28	34	anti-parallel
Strand 4	M	49	56	anti-parallel
Strand 5	M	63	69	anti-parallel
Strand 6	M	75	84	anti-parallel
Strand 7	M	90	99	anti-parallel
Strand 8	M	112	121	anti-parallel
Strand 9	M	10	14	anti-parallel

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There are 9 strands in NA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	19	24	anti-parallel
Strand 3	N	28	34	anti-parallel
Strand 4	N	49	56	anti-parallel
Strand 5	N	63	69	anti-parallel
Strand 6	N	75	84	anti-parallel
Strand 7	N	90	99	anti-parallel
Strand 8	N	112	121	anti-parallel
Strand 9	N	10	14	anti-parallel

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There are 9 strands in OA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	14	first strand
Strand 2	O	19	25	anti-parallel
Strand 3	O	28	34	anti-parallel
Strand 4	O	49	56	anti-parallel
Strand 5	O	63	69	anti-parallel
Strand 6	O	75	84	anti-parallel
Strand 7	O	90	99	anti-parallel
Strand 8	O	112	121	anti-parallel
Strand 9	O	10	14	anti-parallel

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There are 9 strands in PA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	14	first strand
Strand 2	P	19	25	anti-parallel
Strand 3	P	28	34	anti-parallel
Strand 4	P	49	56	anti-parallel
Strand 5	P	63	69	anti-parallel
Strand 6	P	75	84	anti-parallel
Strand 7	P	90	99	anti-parallel
Strand 8	P	112	121	anti-parallel
Strand 9	P	10	14	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BJ8