Analysis of interatomic Contacts of Structural Units in PDB entry:
4BJK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BJK entry

There are 4 chains in PDB entry 4BJK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 29	ALA 478
B	GLY 29	ALA 478
C	GLY 29	ALA 478
D	GLY 29	ALA 478

There are102 helices in PDB entry 4BJK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	44	51	Right-handed alpha
Helix 2	2	A	51	63	Right-handed alpha
Helix 3	3	A	82	85	Right-handed 310
Helix 4	4	A	86	91	Right-handed alpha
Helix 5	5	A	103	105	Right-handed 310
Helix 6	6	A	106	111	Right-handed alpha
Helix 7	7	A	114	118	Right-handed 310
Helix 8	8	A	119	134	Right-handed alpha
Helix 9	9	A	135	139	Right-handed 310
Helix 10	10	A	141	158	Right-handed alpha
Helix 11	11	A	167	184	Right-handed alpha
Helix 12	12	A	185	192	Right-handed alpha
Helix 13	13	A	193	207	Right-handed alpha
Helix 14	14	A	209	214	Right-handed 310
Helix 15	15	A	215	220	Right-handed 310
Helix 16	16	A	226	252	Right-handed alpha
Helix 17	17	A	260	267	Right-handed alpha
Helix 18	18	A	277	309	Right-handed alpha
Helix 19	19	A	312	324	Right-handed alpha
Helix 20	20	A	331	338	Right-handed alpha
Helix 21	21	A	339	353	Right-handed alpha
Helix 22	22	A	383	388	Right-handed alpha
Helix 23	23	A	417	421	Right-handed 310
Helix 24	24	A	424	442	Right-handed alpha
Helix 25	25	A	466	468	Right-handed 310
Helix 26	26	B	44	51	Right-handed alpha
Helix 27	27	B	51	63	Right-handed alpha
Helix 28	28	B	82	84	Right-handed 310
Helix 29	29	B	85	91	Right-handed alpha
Helix 30	30	B	100	105	Right-handed 310
Helix 31	31	B	106	111	Right-handed alpha
Helix 32	32	B	114	118	Right-handed 310
Helix 33	33	B	119	134	Right-handed alpha
Helix 34	34	B	135	139	Right-handed 310
Helix 35	35	B	141	158	Right-handed alpha
Helix 36	36	B	167	184	Right-handed alpha
Helix 37	37	B	185	192	Right-handed alpha
Helix 38	38	B	193	207	Right-handed alpha
Helix 39	39	B	209	214	Right-handed 310
Helix 40	40	B	215	221	Right-handed 310
Helix 41	41	B	225	254	Right-handed alpha
Helix 42	42	B	260	266	Right-handed alpha
Helix 43	43	B	277	309	Right-handed alpha
Helix 44	44	B	312	325	Right-handed alpha
Helix 45	45	B	331	338	Right-handed alpha
Helix 46	46	B	339	353	Right-handed alpha
Helix 47	47	B	383	388	Right-handed alpha
Helix 48	48	B	417	421	Right-handed 310
Helix 49	49	B	424	442	Right-handed alpha
Helix 50	50	B	466	468	Right-handed 310
Helix 51	51	C	44	51	Right-handed alpha
Helix 52	52	C	51	63	Right-handed alpha
Helix 53	53	C	82	85	Right-handed 310
Helix 54	54	C	86	91	Right-handed alpha
Helix 55	55	C	103	105	Right-handed 310
Helix 56	56	C	106	111	Right-handed alpha
Helix 57	57	C	114	118	Right-handed 310
Helix 58	58	C	119	133	Right-handed alpha
Helix 59	59	C	135	137	Right-handed 310
Helix 60	60	C	138	158	Right-handed alpha
Helix 61	61	C	167	184	Right-handed alpha
Helix 62	62	C	185	190	Right-handed alpha
Helix 63	63	C	193	208	Right-handed alpha
Helix 64	64	C	209	214	Right-handed 310
Helix 65	65	C	215	221	Right-handed 310
Helix 66	66	C	223	254	Right-handed alpha
Helix 67	67	C	260	267	Right-handed alpha
Helix 68	68	C	277	308	Right-handed alpha
Helix 69	69	C	309	311	Right-handed 310
Helix 70	70	C	312	324	Right-handed alpha
Helix 71	71	C	331	338	Right-handed alpha
Helix 72	72	C	339	353	Right-handed alpha
Helix 73	73	C	383	388	Right-handed alpha
Helix 74	74	C	417	421	Right-handed 310
Helix 75	75	C	424	442	Right-handed alpha
Helix 76	76	C	466	468	Right-handed 310
Helix 77	77	D	44	51	Right-handed alpha
Helix 78	78	D	51	63	Right-handed alpha
Helix 79	79	D	82	85	Right-handed 310
Helix 80	80	D	86	91	Right-handed alpha
Helix 81	81	D	101	105	Right-handed 310
Helix 82	82	D	106	111	Right-handed alpha
Helix 83	83	D	114	118	Right-handed 310
Helix 84	84	D	119	133	Right-handed alpha
Helix 85	85	D	134	139	Right-handed 310
Helix 86	86	D	141	158	Right-handed alpha
Helix 87	87	D	167	184	Right-handed alpha
Helix 88	88	D	185	192	Right-handed alpha
Helix 89	89	D	193	208	Right-handed alpha
Helix 90	90	D	209	214	Right-handed 310
Helix 91	91	D	215	219	Right-handed 310
Helix 92	92	D	223	249	Right-handed alpha
Helix 93	93	D	260	267	Right-handed alpha
Helix 94	94	D	277	308	Right-handed alpha
Helix 95	95	D	309	311	Right-handed 310
Helix 96	96	D	312	325	Right-handed alpha
Helix 97	97	D	331	338	Right-handed alpha
Helix 98	98	D	339	353	Right-handed alpha
Helix 99	99	D	383	388	Right-handed alpha
Helix 100	100	D	417	421	Right-handed 310
Helix 101	101	D	424	442	Right-handed alpha
Helix 102	102	D	465	468	Right-handed 310

There are 15 sheets in PDB entry 4BJK. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	379	382	parallel
Strand 4	A	359	363	anti-parallel
Strand 5	A	97	98	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	470	475	anti-parallel
Strand 3	A	443	447	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	369	first strand
Strand 2	A	372	374	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	463	464	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	76	80	anti-parallel
Strand 3	B	379	382	parallel
Strand 4	B	359	363	anti-parallel
Strand 5	B	97	98	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	470	475	anti-parallel
Strand 3	B	443	447	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	372	374	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	463	464	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	75	80	anti-parallel
Strand 3	C	379	382	parallel
Strand 4	C	359	363	anti-parallel
Strand 5	C	97	98	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	166	first strand
Strand 2	C	470	475	anti-parallel
Strand 3	C	443	446	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	369	first strand
Strand 2	C	372	374	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	463	464	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	75	80	anti-parallel
Strand 3	D	379	382	parallel
Strand 4	D	359	363	anti-parallel
Strand 5	D	97	98	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	166	first strand
Strand 2	D	470	475	anti-parallel
Strand 3	D	443	447	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	369	first strand
Strand 2	D	372	374	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BJK

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BJK