Analysis of interatomic Contacts of Structural Units in PDB entry:
4BJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BJP entry

There is 1 chain in PDB entry 4BJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 71ALA 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4BJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 118Right-handed alpha
Helix 2
2
A
144 150Right-handed alpha
Helix 3
3
A
171 174Right-handed 310
Helix 4
4
A
175 180Right-handed alpha
Helix 5
5
A
190 196Right-handed alpha
Helix 6
6
A
196 201Right-handed alpha
Helix 7
7
A
237 255Right-handed alpha
Helix 8
8
A
290 294Right-handed 310
Helix 9
9
A
296 301Right-handed alpha
Helix 10
10
A
305 308Right-handed 310
Helix 11
11
A
309 320Right-handed alpha
Helix 12
12
A
352 358Right-handed alpha
Helix 13
13
A
360 370Right-handed alpha
Helix 14
14
A
373 383Right-handed alpha
Helix 15
15
A
408 417Right-handed alpha
Helix 16
16
A
424 437Right-handed alpha
Helix 17
17
A
460 472Right-handed alpha
Helix 18
18
A
473 476Right-handed 310
Helix 19
19
A
481 485Right-handed 310
Helix 20
20
A
546 561Right-handed alpha
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There are 5 sheets in PDB entry 4BJP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 168first strand
Strand 2
A
81 88anti-parallel
Strand 3
A
74 75anti-parallel
Strand 4
A
232 233parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 278first strand
Strand 2
A
259 266anti-parallel
Strand 3
A
526 533anti-parallel
Strand 4
A
507 519anti-parallel
Strand 5
A
492 501anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 330first strand
Strand 2
A
349 351anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 335first strand
Strand 2
A
340 341anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
456 457anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il