Analysis of interatomic Contacts of Structural Units in PDB entry:
4BJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BJU entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 4BJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 68
A
 HIS 70ALA 548
B
 MET 1ALA 68
B
 HIS 70VAL 542
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 4BJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
39 57Right-handed alpha
Helix 3
3
A
89 101Right-handed alpha
Helix 4
4
A
103 105Right-handed 310
Helix 5
5
A
106 118Right-handed alpha
Helix 6
6
A
137 152Right-handed alpha
Helix 7
7
A
163 177Right-handed alpha
Helix 8
8
A
187 203Right-handed alpha
Helix 9
9
A
220 232Right-handed alpha
Helix 10
10
A
249 253Right-handed 310
Helix 11
11
A
258 266Right-handed alpha
Helix 12
12
A
305 324Right-handed alpha
Helix 13
13
A
341 351Right-handed alpha
Helix 14
14
A
362 371Right-handed alpha
Helix 15
15
A
390 400Right-handed alpha
Helix 16
16
A
404 421Right-handed alpha
Helix 17
17
A
427 443Right-handed alpha
Helix 18
18
A
445 451Right-handed alpha
Helix 19
19
A
467 471Right-handed 310
Helix 20
20
A
485 496Right-handed alpha
Helix 21
21
A
521 540Right-handed alpha
Helix 22
22
B
3 15Right-handed alpha
Helix 23
23
B
39 57Right-handed alpha
Helix 24
24
B
90 101Right-handed alpha
Helix 25
25
B
103 105Right-handed 310
Helix 26
26
B
106 119Right-handed alpha
Helix 27
27
B
137 152Right-handed alpha
Helix 28
28
B
163 177Right-handed alpha
Helix 29
29
B
187 203Right-handed alpha
Helix 30
30
B
220 230Right-handed alpha
Helix 31
31
B
249 253Right-handed 310
Helix 32
32
B
258 266Right-handed alpha
Helix 33
33
B
305 324Right-handed alpha
Helix 34
34
B
326 330Right-handed 310
Helix 35
35
B
341 351Right-handed alpha
Helix 36
36
B
362 371Right-handed alpha
Helix 37
37
B
390 400Right-handed alpha
Helix 38
38
B
404 421Right-handed alpha
Helix 39
39
B
427 443Right-handed alpha
Helix 40
40
B
445 452Right-handed alpha
Helix 41
41
B
467 471Right-handed 310
Helix 42
42
B
485 495Right-handed alpha
Helix 43
43
B
521 540Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 4BJU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
127 132parallel
Strand 5
A
155 161parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
212 215parallel
Strand 3
A
279 283parallel
Strand 4
A
290 295anti-parallel
Strand 5
A
301 304anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
332 336parallel
Strand 3
A
375 379parallel
Strand 4
A
385 389anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 464first strand
Strand 2
A
512 518anti-parallel
Strand 3
A
501 506anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
479 482anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
75 81anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
127 132parallel
Strand 5
B
155 161parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
212 215parallel
Strand 3
B
279 283parallel
Strand 4
B
290 295anti-parallel
Strand 5
B
301 304anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
332 336parallel
Strand 3
B
375 379parallel
Strand 4
B
385 389anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 464first strand
Strand 2
B
512 518anti-parallel
Strand 3
B
501 506anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
472 474first strand
Strand 2
B
479 482anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il