Analysis of interatomic Contacts of Structural Units in PDB entry:
4BKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BKC entry

There are 4 chains in PDB entry 4BKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ASN 4
A
 GLU 6ASN 159
B
 GLY 1ASN 4
B
 GLU 6ASN 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4BKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 23Right-handed alpha
Helix 2
2
A
25 34Right-handed alpha
Helix 3
3
A
129 154Right-handed alpha
Helix 4
4
B
14 23Right-handed alpha
Helix 5
5
B
25 34Right-handed alpha
Helix 6
6
B
129 154Right-handed alpha
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There is 1 sheet ( AA) in PDB entry 4BKC.

There are 14 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
53 57anti-parallel
Strand 3
A
66 75anti-parallel
Strand 4
A
80 88anti-parallel
Strand 5
A
95 106anti-parallel
Strand 6
A
112 122anti-parallel
Strand 7
A
2 11anti-parallel
Strand 8
B
2 11anti-parallel
Strand 9
B
112 122anti-parallel
Strand 10
B
95 106anti-parallel
Strand 11
B
80 88anti-parallel
Strand 12
B
66 75anti-parallel
Strand 13
B
53 57anti-parallel
Strand 14
B
40 45anti-parallel
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