Analysis of interatomic Contacts of Structural Units in PDB entry:
4BKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BKM entry

There are 3 chains in PDB entry 4BKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LEU 303
B
 GLY 0LEU 303
C
 GLY 0LEU 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 4BKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 19Right-handed alpha
Helix 2
2
A
39 50Right-handed alpha
Helix 3
3
A
64 75Right-handed alpha
Helix 4
4
A
81 83Right-handed 310
Helix 5
5
A
88 100Right-handed alpha
Helix 6
6
A
113 123Right-handed alpha
Helix 7
7
A
139 144Right-handed alpha
Helix 8
8
A
164 175Right-handed alpha
Helix 9
9
A
201 214Right-handed alpha
Helix 10
10
A
225 233Right-handed alpha
Helix 11
11
A
238 240Right-handed 310
Helix 12
12
A
251 260Right-handed alpha
Helix 13
13
A
272 283Right-handed alpha
Helix 14
14
A
284 288Right-handed 310
Helix 15
15
A
295 303Right-handed 310
Helix 16
16
B
8 19Right-handed alpha
Helix 17
17
B
39 50Right-handed alpha
Helix 18
18
B
64 75Right-handed alpha
Helix 19
19
B
81 83Right-handed 310
Helix 20
20
B
88 100Right-handed alpha
Helix 21
21
B
113 123Right-handed alpha
Helix 22
22
B
139 144Right-handed alpha
Helix 23
23
B
164 175Right-handed alpha
Helix 24
24
B
201 214Right-handed alpha
Helix 25
25
B
225 233Right-handed alpha
Helix 26
26
B
238 240Right-handed 310
Helix 27
27
B
251 260Right-handed alpha
Helix 28
28
B
272 283Right-handed alpha
Helix 29
29
B
284 288Right-handed 310
Helix 30
30
B
295 303Right-handed 310
Helix 31
31
C
8 19Right-handed alpha
Helix 32
32
C
39 50Right-handed alpha
Helix 33
33
C
64 75Right-handed alpha
Helix 34
34
C
81 83Right-handed 310
Helix 35
35
C
88 100Right-handed alpha
Helix 36
36
C
113 123Right-handed alpha
Helix 37
37
C
139 144Right-handed alpha
Helix 38
38
C
164 175Right-handed alpha
Helix 39
39
C
201 214Right-handed alpha
Helix 40
40
C
225 233Right-handed alpha
Helix 41
41
C
238 240Right-handed 310
Helix 42
42
C
251 260Right-handed alpha
Helix 43
43
C
272 283Right-handed alpha
Helix 44
44
C
284 288Right-handed 310
Helix 45
45
C
295 303Right-handed 310
Helix 46
46
D
8 19Right-handed alpha
Helix 47
47
D
39 50Right-handed alpha
Helix 48
48
D
64 75Right-handed alpha
Helix 49
49
D
81 83Right-handed 310
Helix 50
50
D
88 100Right-handed alpha
Helix 51
51
D
113 123Right-handed alpha
Helix 52
52
D
139 144Right-handed alpha
Helix 53
53
D
164 175Right-handed alpha
Helix 54
54
D
201 214Right-handed alpha
Helix 55
55
D
225 233Right-handed alpha
Helix 56
56
D
238 240Right-handed 310
Helix 57
57
D
251 260Right-handed alpha
Helix 58
58
D
272 283Right-handed alpha
Helix 59
59
D
295 303Right-handed 310
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There are 16 sheets in PDB entry 4BKM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
291 293parallel
Strand 3
A
262 266parallel
Strand 4
A
242 246parallel
Strand 5
A
21 25parallel
Strand 6
A
53 58parallel
Strand 7
A
85 87parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
35 36anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
107 111parallel
Strand 3
A
152 157parallel
Strand 4
A
181 184parallel
Strand 5
A
218 219parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
198 200anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
291 293parallel
Strand 3
B
262 266parallel
Strand 4
B
242 246parallel
Strand 5
B
21 25parallel
Strand 6
B
53 58parallel
Strand 7
B
85 87parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
35 36anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
107 111parallel
Strand 3
B
152 157parallel
Strand 4
B
181 184parallel
Strand 5
B
218 219parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
198 200anti-parallel
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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
291 293parallel
Strand 3
C
262 266parallel
Strand 4
C
242 246parallel
Strand 5
C
21 25parallel
Strand 6
C
53 58parallel
Strand 7
C
85 87parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 32first strand
Strand 2
C
35 36anti-parallel
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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 128first strand
Strand 2
C
107 111parallel
Strand 3
C
152 157parallel
Strand 4
C
181 184parallel
Strand 5
C
218 219parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
190 192first strand
Strand 2
C
198 200anti-parallel
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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
291 293parallel
Strand 3
D
262 266parallel
Strand 4
D
242 246parallel
Strand 5
D
21 25parallel
Strand 6
D
53 58parallel
Strand 7
D
85 87parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
35 36anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
126 128first strand
Strand 2
D
107 111parallel
Strand 3
D
152 157parallel
Strand 4
D
181 184parallel
Strand 5
D
218 219parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
190 192first strand
Strand 2
D
198 200anti-parallel
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