Analysis of interatomic Contacts of Structural Units in PDB entry:
4BMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BMA entry

There are 2 chains in PDB entry 4BMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 27LYS 507
B
 PRO 27LYS 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 4BMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 42Right-handed alpha
Helix 2
2
A
44 49Right-handed 310
Helix 3
3
A
50 54Right-handed 310
Helix 4
4
A
55 68Right-handed alpha
Helix 5
5
A
70 83Right-handed alpha
Helix 6
6
A
98 100Right-handed 310
Helix 7
7
A
109 126Right-handed alpha
Helix 8
8
A
147 151Right-handed 310
Helix 9
9
A
160 181Right-handed alpha
Helix 10
10
A
193 195Right-handed 310
Helix 11
11
A
196 207Right-handed alpha
Helix 12
12
A
208 212Right-handed 310
Helix 13
13
A
213 215Right-handed 310
Helix 14
14
A
248 250Right-handed 310
Helix 15
15
A
251 259Right-handed alpha
Helix 16
16
A
260 269Right-handed alpha
Helix 17
17
A
287 297Right-handed alpha
Helix 18
18
A
329 333Right-handed 310
Helix 19
19
A
334 340Right-handed alpha
Helix 20
20
A
363 368Right-handed alpha
Helix 21
21
A
368 373Right-handed alpha
Helix 22
22
A
374 376Right-handed 310
Helix 23
23
A
409 417Right-handed 310
Helix 24
24
A
418 420Right-handed 310
Helix 25
25
A
428 433Right-handed alpha
Helix 26
26
A
446 465Right-handed alpha
Helix 27
27
A
491 495Right-handed 310
Helix 28
28
B
28 42Right-handed alpha
Helix 29
29
B
44 49Right-handed 310
Helix 30
30
B
50 54Right-handed 310
Helix 31
31
B
55 68Right-handed alpha
Helix 32
32
B
70 83Right-handed alpha
Helix 33
33
B
109 126Right-handed alpha
Helix 34
34
B
139 143Right-handed 310
Helix 35
35
B
148 151Right-handed 310
Helix 36
36
B
160 181Right-handed alpha
Helix 37
37
B
193 207Right-handed alpha
Helix 38
38
B
208 212Right-handed 310
Helix 39
39
B
213 215Right-handed 310
Helix 40
40
B
248 250Right-handed 310
Helix 41
41
B
251 259Right-handed alpha
Helix 42
42
B
260 269Right-handed alpha
Helix 43
43
B
287 297Right-handed alpha
Helix 44
44
B
363 367Right-handed alpha
Helix 45
45
B
368 373Right-handed alpha
Helix 46
46
B
374 376Right-handed 310
Helix 47
47
B
409 417Right-handed 310
Helix 48
48
B
418 420Right-handed 310
Helix 49
49
B
428 433Right-handed alpha
Helix 50
50
B
446 465Right-handed alpha
Helix 51
51
B
491 495Right-handed 310
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There are 14 sheets in PDB entry 4BMA. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, BA, BB, BC, BD, BE, BF, BG,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
317 321anti-parallel
Strand 3
A
324 328anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
422 426parallel
Strand 3
A
301 307parallel
Strand 4
A
353 362anti-parallel
Strand 5
A
272 277anti-parallel
Strand 6
A
129 134parallel
Strand 7
A
188 192parallel
Strand 8
A
217 221parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
244 246anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
403 407anti-parallel
Strand 3
A
379 383anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
241 242anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 471first strand
Strand 2
A
498 501parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 480first strand
Strand 2
A
503 505parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
317 321anti-parallel
Strand 3
B
324 328anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
422 426parallel
Strand 3
B
301 307parallel
Strand 4
B
353 362anti-parallel
Strand 5
B
272 277anti-parallel
Strand 6
B
129 135parallel
Strand 7
B
188 192parallel
Strand 8
B
217 221parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 226first strand
Strand 2
B
244 246anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
403 407anti-parallel
Strand 3
B
379 383anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 238first strand
Strand 2
B
241 242anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 471first strand
Strand 2
B
498 501parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 480first strand
Strand 2
B
503 505parallel
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