Analysis of interatomic Contacts of Structural Units in PDB entry:
4BMJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BMJ entry

There are 11 chains in PDB entry 4BMJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4VAL 65
B
 VAL 6ASN 67
C
 PRO 2ASN 67
D
 HIS 7ASN 64
E
 VAL 6VAL 65
F
 LYS 8VAL 65
G
 VAL 6ASN 64
H
 GLY 1ASN 64
I
 PRO 2ASN 64
J
 PRO 2VAL 65
K
 VAL 6LEU 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 4BMJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 32Right-handed alpha
Helix 2
2
A
49 63Right-handed alpha
Helix 3
3
B
22 32Right-handed alpha
Helix 4
4
B
49 64Right-handed alpha
Helix 5
5
C
22 32Right-handed alpha
Helix 6
6
C
49 63Right-handed alpha
Helix 7
7
D
22 32Right-handed alpha
Helix 8
8
D
49 63Right-handed alpha
Helix 9
9
E
22 32Right-handed alpha
Helix 10
10
E
49 63Right-handed alpha
Helix 11
11
F
22 32Right-handed alpha
Helix 12
12
F
49 63Right-handed alpha
Helix 13
13
G
22 32Right-handed alpha
Helix 14
14
G
49 64Right-handed alpha
Helix 15
15
H
22 32Right-handed alpha
Helix 16
16
H
49 63Right-handed alpha
Helix 17
17
I
22 32Right-handed alpha
Helix 18
18
I
49 63Right-handed alpha
Helix 19
19
J
22 32Right-handed alpha
Helix 20
20
J
49 60Right-handed alpha
Helix 21
21
K
22 32Right-handed alpha
Helix 22
22
K
49 63Right-handed alpha
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There are 20 sheets in PDB entry 4BMJ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB, EA, EB, FA, GA, HA, HB, IA, IB, JA, JB, KA, KB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
16 17anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
43 44anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
16 17anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
43 44anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
C
16 17anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
C
43 44anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
D
13 17anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 36first strand
Strand 2
D
43 44anti-parallel
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There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
8 9first strand
Strand 2
E
16 17anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 36first strand
Strand 2
E
43 44anti-parallel
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There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
35 36first strand
Strand 2
F
43 44anti-parallel
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There are 2 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
35 36first strand
Strand 2
G
43 44anti-parallel
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There are 2 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 9first strand
Strand 2
H
16 17anti-parallel
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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
35 36first strand
Strand 2
H
43 44anti-parallel
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There are 2 strands in IA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
8 9first strand
Strand 2
I
16 17anti-parallel
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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
35 36first strand
Strand 2
I
43 44anti-parallel
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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
8 9first strand
Strand 2
J
16 17anti-parallel
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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
35 36first strand
Strand 2
J
43 44anti-parallel
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There are 2 strands in KA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
8 9first strand
Strand 2
K
16 17anti-parallel
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There are 2 strands in KB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
35 36first strand
Strand 2
K
43 44anti-parallel
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