Analysis of interatomic Contacts of Structural Units in PDB entry:
4BMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BMM entry

There are 3 chains in PDB entry 4BMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 30	LYS 477
B	LYS 30	LYS 477
C	LYS 30	TYR 443

There are101 helices in PDB entry 4BMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	39	42	Right-handed 310
Helix 2	2	A	44	51	Right-handed alpha
Helix 3	3	A	51	63	Right-handed alpha
Helix 4	4	A	82	84	Right-handed 310
Helix 5	5	A	85	91	Right-handed alpha
Helix 6	6	A	103	105	Right-handed 310
Helix 7	7	A	106	111	Right-handed alpha
Helix 8	8	A	114	118	Right-handed 310
Helix 9	9	A	119	132	Right-handed alpha
Helix 10	10	A	135	140	Right-handed 310
Helix 11	11	A	141	158	Right-handed alpha
Helix 12	12	A	166	184	Right-handed alpha
Helix 13	13	A	185	192	Right-handed alpha
Helix 14	14	A	193	208	Right-handed alpha
Helix 15	15	A	215	221	Right-handed 310
Helix 16	16	A	224	250	Right-handed alpha
Helix 17	17	A	260	267	Right-handed alpha
Helix 18	18	A	277	294	Right-handed alpha
Helix 19	19	A	294	309	Right-handed alpha
Helix 20	20	A	312	324	Right-handed alpha
Helix 21	21	A	331	338	Right-handed alpha
Helix 22	22	A	339	353	Right-handed alpha
Helix 23	23	A	383	389	Right-handed alpha
Helix 24	24	A	417	421	Right-handed 310
Helix 25	25	A	424	442	Right-handed alpha
Helix 26	26	A	465	469	Right-handed 310
Helix 27	27	B	44	51	Right-handed alpha
Helix 28	28	B	51	64	Right-handed alpha
Helix 29	29	B	82	84	Right-handed 310
Helix 30	30	B	85	91	Right-handed alpha
Helix 31	31	B	99	104	Right-handed alpha
Helix 32	32	B	106	111	Right-handed alpha
Helix 33	33	B	114	118	Right-handed 310
Helix 34	34	B	119	133	Right-handed alpha
Helix 35	35	B	134	140	Right-handed 310
Helix 36	36	B	141	158	Right-handed alpha
Helix 37	37	B	167	184	Right-handed alpha
Helix 38	38	B	185	192	Right-handed alpha
Helix 39	39	B	193	207	Right-handed alpha
Helix 40	40	B	209	214	Right-handed 310
Helix 41	41	B	216	221	Right-handed alpha
Helix 42	42	B	224	251	Right-handed alpha
Helix 43	43	B	260	267	Right-handed alpha
Helix 44	44	B	277	308	Right-handed alpha
Helix 45	45	B	309	311	Right-handed 310
Helix 46	46	B	312	324	Right-handed alpha
Helix 47	47	B	331	337	Right-handed alpha
Helix 48	48	B	339	353	Right-handed alpha
Helix 49	49	B	383	389	Right-handed alpha
Helix 50	50	B	424	442	Right-handed alpha
Helix 51	51	B	466	468	Right-handed 310
Helix 52	52	C	44	51	Right-handed alpha
Helix 53	53	C	51	64	Right-handed alpha
Helix 54	54	C	85	91	Right-handed alpha
Helix 55	55	C	99	103	Right-handed alpha
Helix 56	56	C	105	111	Right-handed alpha
Helix 57	57	C	114	118	Right-handed 310
Helix 58	58	C	119	134	Right-handed alpha
Helix 59	59	C	135	140	Right-handed 310
Helix 60	60	C	141	158	Right-handed alpha
Helix 61	61	C	167	184	Right-handed alpha
Helix 62	62	C	185	192	Right-handed alpha
Helix 63	63	C	193	206	Right-handed alpha
Helix 64	64	C	209	214	Right-handed 310
Helix 65	65	C	215	221	Right-handed 310
Helix 66	66	C	226	250	Right-handed alpha
Helix 67	67	C	260	268	Right-handed alpha
Helix 68	68	C	277	308	Right-handed alpha
Helix 69	69	C	309	311	Right-handed 310
Helix 70	70	C	312	325	Right-handed alpha
Helix 71	71	C	331	338	Right-handed alpha
Helix 72	72	C	339	353	Right-handed alpha
Helix 73	73	C	383	389	Right-handed alpha
Helix 74	74	C	417	421	Right-handed 310
Helix 75	75	C	424	442	Right-handed alpha
Helix 76	76	C	466	468	Right-handed 310
Helix 77	77	D	44	51	Right-handed alpha
Helix 78	78	D	51	63	Right-handed alpha
Helix 79	79	D	82	84	Right-handed 310
Helix 80	80	D	85	91	Right-handed alpha
Helix 81	81	D	99	103	Right-handed 310
Helix 82	82	D	103	105	Right-handed 310
Helix 83	83	D	106	111	Right-handed alpha
Helix 84	84	D	114	118	Right-handed 310
Helix 85	85	D	119	132	Right-handed alpha
Helix 86	86	D	135	139	Right-handed 310
Helix 87	87	D	141	158	Right-handed alpha
Helix 88	88	D	167	184	Right-handed alpha
Helix 89	89	D	185	192	Right-handed alpha
Helix 90	90	D	193	208	Right-handed alpha
Helix 91	91	D	209	214	Right-handed 310
Helix 92	92	D	215	220	Right-handed 310
Helix 93	93	D	227	251	Right-handed alpha
Helix 94	94	D	260	266	Right-handed alpha
Helix 95	95	D	277	309	Right-handed alpha
Helix 96	96	D	312	324	Right-handed alpha
Helix 97	97	D	331	338	Right-handed alpha
Helix 98	98	D	339	353	Right-handed alpha
Helix 99	99	D	383	389	Right-handed alpha
Helix 100	100	D	417	421	Right-handed 310
Helix 101	101	D	424	442	Right-handed alpha

There are 15 sheets in PDB entry 4BMM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	75	80	anti-parallel
Strand 3	A	379	382	parallel
Strand 4	A	359	363	anti-parallel
Strand 5	A	97	98	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	163	first strand
Strand 2	A	471	475	anti-parallel
Strand 3	A	443	447	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	369	first strand
Strand 2	A	372	374	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	75	80	anti-parallel
Strand 3	B	379	382	parallel
Strand 4	B	359	363	anti-parallel
Strand 5	B	97	98	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	470	475	anti-parallel
Strand 3	B	443	447	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	368	first strand
Strand 2	B	373	374	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	463	464	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	75	80	anti-parallel
Strand 3	C	379	382	parallel
Strand 4	C	359	363	anti-parallel
Strand 5	C	97	98	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	166	first strand
Strand 2	C	470	475	anti-parallel
Strand 3	C	443	447	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	369	first strand
Strand 2	C	372	374	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	456	first strand
Strand 2	C	463	464	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	75	80	anti-parallel
Strand 3	D	379	382	parallel
Strand 4	D	359	363	anti-parallel
Strand 5	D	97	98	anti-parallel

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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	166	first strand
Strand 2	D	470	475	anti-parallel
Strand 3	D	443	447	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	367	369	first strand
Strand 2	D	372	374	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	456	first strand
Strand 2	D	463	464	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BMM