Analysis of interatomic Contacts of Structural Units in PDB entry:
4BMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BMV entry

There are 10 chains in PDB entry 4BMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	TYR 258
B	THR 3	ARG 259
C	THR 2	ARG 259
D	THR 3	ARG 259
E	THR 3	ARG 259
F	LEU 4	ARG 259
G	LEU 4	ARG 259
H	LEU 4	ARG 259
I	LEU 4	TYR 258
J	LEU 4	ARG 259

There are143 helices in PDB entry 4BMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	14	27	Right-handed alpha
Helix 2	2	A	37	53	Right-handed alpha
Helix 3	3	A	65	79	Right-handed alpha
Helix 4	4	A	96	100	Right-handed 310
Helix 5	5	A	101	113	Right-handed alpha
Helix 6	6	A	113	131	Right-handed alpha
Helix 7	7	A	140	145	Right-handed 310
Helix 8	8	A	145	149	Right-handed 310
Helix 9	9	A	150	172	Right-handed alpha
Helix 10	10	A	173	175	Right-handed 310
Helix 11	11	A	189	194	Right-handed alpha
Helix 12	12	A	197	201	Right-handed 310
Helix 13	13	A	206	220	Right-handed alpha
Helix 14	14	A	232	248	Right-handed alpha
Helix 15	15	B	14	27	Right-handed alpha
Helix 16	16	B	37	53	Right-handed alpha
Helix 17	17	B	65	79	Right-handed alpha
Helix 18	18	B	96	100	Right-handed 310
Helix 19	19	B	101	113	Right-handed alpha
Helix 20	20	B	113	131	Right-handed alpha
Helix 21	21	B	140	145	Right-handed 310
Helix 22	22	B	145	149	Right-handed 310
Helix 23	23	B	150	172	Right-handed alpha
Helix 24	24	B	173	175	Right-handed 310
Helix 25	25	B	189	194	Right-handed alpha
Helix 26	26	B	197	201	Right-handed 310
Helix 27	27	B	206	220	Right-handed alpha
Helix 28	28	B	232	248	Right-handed alpha
Helix 29	29	B	255	259	Right-handed 310
Helix 30	30	C	14	27	Right-handed alpha
Helix 31	31	C	37	53	Right-handed alpha
Helix 32	32	C	65	79	Right-handed alpha
Helix 33	33	C	96	100	Right-handed 310
Helix 34	34	C	101	113	Right-handed alpha
Helix 35	35	C	113	131	Right-handed alpha
Helix 36	36	C	140	145	Right-handed 310
Helix 37	37	C	145	149	Right-handed 310
Helix 38	38	C	150	172	Right-handed alpha
Helix 39	39	C	173	175	Right-handed 310
Helix 40	40	C	189	194	Right-handed alpha
Helix 41	41	C	197	201	Right-handed 310
Helix 42	42	C	206	220	Right-handed alpha
Helix 43	43	C	232	248	Right-handed alpha
Helix 44	44	C	255	259	Right-handed 310
Helix 45	45	D	14	27	Right-handed alpha
Helix 46	46	D	37	53	Right-handed alpha
Helix 47	47	D	65	79	Right-handed alpha
Helix 48	48	D	96	100	Right-handed 310
Helix 49	49	D	101	113	Right-handed alpha
Helix 50	50	D	113	131	Right-handed alpha
Helix 51	51	D	140	145	Right-handed 310
Helix 52	52	D	145	149	Right-handed 310
Helix 53	53	D	150	172	Right-handed alpha
Helix 54	54	D	173	175	Right-handed 310
Helix 55	55	D	189	194	Right-handed alpha
Helix 56	56	D	197	201	Right-handed 310
Helix 57	57	D	206	220	Right-handed alpha
Helix 58	58	D	232	248	Right-handed alpha
Helix 59	59	D	255	259	Right-handed 310
Helix 60	60	E	14	27	Right-handed alpha
Helix 61	61	E	37	53	Right-handed alpha
Helix 62	62	E	65	79	Right-handed alpha
Helix 63	63	E	96	100	Right-handed 310
Helix 64	64	E	101	113	Right-handed alpha
Helix 65	65	E	113	131	Right-handed alpha
Helix 66	66	E	140	145	Right-handed 310
Helix 67	67	E	145	149	Right-handed 310
Helix 68	68	E	150	172	Right-handed alpha
Helix 69	69	E	173	175	Right-handed 310
Helix 70	70	E	189	195	Right-handed alpha
Helix 71	71	E	197	201	Right-handed 310
Helix 72	72	E	206	220	Right-handed alpha
Helix 73	73	E	232	248	Right-handed alpha
Helix 74	74	E	255	259	Right-handed 310
Helix 75	75	F	14	27	Right-handed alpha
Helix 76	76	F	37	53	Right-handed alpha
Helix 77	77	F	65	79	Right-handed alpha
Helix 78	78	F	96	100	Right-handed 310
Helix 79	79	F	101	113	Right-handed alpha
Helix 80	80	F	113	131	Right-handed alpha
Helix 81	81	F	140	145	Right-handed 310
Helix 82	82	F	145	149	Right-handed 310
Helix 83	83	F	150	172	Right-handed alpha
Helix 84	84	F	189	194	Right-handed alpha
Helix 85	85	F	197	201	Right-handed 310
Helix 86	86	F	206	220	Right-handed alpha
Helix 87	87	F	232	248	Right-handed alpha
Helix 88	88	F	255	259	Right-handed 310
Helix 89	89	G	14	27	Right-handed alpha
Helix 90	90	G	37	53	Right-handed alpha
Helix 91	91	G	65	79	Right-handed alpha
Helix 92	92	G	96	100	Right-handed 310
Helix 93	93	G	101	113	Right-handed alpha
Helix 94	94	G	113	131	Right-handed alpha
Helix 95	95	G	140	145	Right-handed 310
Helix 96	96	G	145	149	Right-handed 310
Helix 97	97	G	150	172	Right-handed alpha
Helix 98	98	G	173	175	Right-handed 310
Helix 99	99	G	189	194	Right-handed alpha
Helix 100	100	G	197	201	Right-handed 310
Helix 101	101	G	206	220	Right-handed alpha
Helix 102	102	G	232	248	Right-handed alpha
Helix 103	103	H	14	27	Right-handed alpha
Helix 104	104	H	37	53	Right-handed alpha
Helix 105	105	H	65	79	Right-handed alpha
Helix 106	106	H	96	100	Right-handed 310
Helix 107	107	H	101	113	Right-handed alpha
Helix 108	108	H	113	131	Right-handed alpha
Helix 109	109	H	140	145	Right-handed 310
Helix 110	110	H	145	149	Right-handed 310
Helix 111	111	H	150	172	Right-handed alpha
Helix 112	112	H	173	175	Right-handed 310
Helix 113	113	H	189	194	Right-handed alpha
Helix 114	114	H	197	201	Right-handed 310
Helix 115	115	H	206	220	Right-handed alpha
Helix 116	116	H	232	248	Right-handed alpha
Helix 117	117	I	14	27	Right-handed alpha
Helix 118	118	I	37	53	Right-handed alpha
Helix 119	119	I	65	79	Right-handed alpha
Helix 120	120	I	96	100	Right-handed 310
Helix 121	121	I	101	113	Right-handed alpha
Helix 122	122	I	113	131	Right-handed alpha
Helix 123	123	I	140	145	Right-handed 310
Helix 124	124	I	145	149	Right-handed 310
Helix 125	125	I	150	172	Right-handed alpha
Helix 126	126	I	173	175	Right-handed 310
Helix 127	127	I	189	194	Right-handed alpha
Helix 128	128	I	206	220	Right-handed alpha
Helix 129	129	I	232	248	Right-handed alpha
Helix 130	130	J	14	27	Right-handed alpha
Helix 131	131	J	37	53	Right-handed alpha
Helix 132	132	J	65	79	Right-handed alpha
Helix 133	133	J	96	100	Right-handed 310
Helix 134	134	J	101	113	Right-handed alpha
Helix 135	135	J	113	131	Right-handed alpha
Helix 136	136	J	140	145	Right-handed 310
Helix 137	137	J	145	149	Right-handed 310
Helix 138	138	J	150	172	Right-handed alpha
Helix 139	139	J	173	175	Right-handed 310
Helix 140	140	J	189	194	Right-handed alpha
Helix 141	141	J	206	220	Right-handed alpha
Helix 142	142	J	232	248	Right-handed alpha
Helix 143	143	J	255	259	Right-handed 310

There are 10 sheets in PDB entry 4BMV. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, EA, FA, GA, HA, IA, JA,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	31	35	parallel
Strand 3	A	6	10	parallel
Strand 4	A	82	87	parallel
Strand 5	A	134	138	parallel
Strand 6	A	177	181	parallel
Strand 7	A	224	225	parallel

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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	31	35	parallel
Strand 3	B	6	10	parallel
Strand 4	B	82	87	parallel
Strand 5	B	134	138	parallel
Strand 6	B	177	181	parallel
Strand 7	B	224	225	parallel

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There are 7 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	31	35	parallel
Strand 3	C	6	10	parallel
Strand 4	C	82	87	parallel
Strand 5	C	134	138	parallel
Strand 6	C	177	181	parallel
Strand 7	C	224	225	parallel

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There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	31	35	parallel
Strand 3	D	6	10	parallel
Strand 4	D	82	87	parallel
Strand 5	D	134	138	parallel
Strand 6	D	177	181	parallel
Strand 7	D	224	225	parallel

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There are 7 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	60	first strand
Strand 2	E	31	35	parallel
Strand 3	E	6	10	parallel
Strand 4	E	82	87	parallel
Strand 5	E	134	138	parallel
Strand 6	E	177	181	parallel
Strand 7	E	224	225	parallel

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There are 7 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	60	first strand
Strand 2	F	31	35	parallel
Strand 3	F	6	10	parallel
Strand 4	F	82	87	parallel
Strand 5	F	133	138	parallel
Strand 6	F	176	181	parallel
Strand 7	F	224	225	parallel

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There are 7 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	56	60	first strand
Strand 2	G	31	35	parallel
Strand 3	G	6	10	parallel
Strand 4	G	82	87	parallel
Strand 5	G	134	138	parallel
Strand 6	G	177	181	parallel
Strand 7	G	224	225	parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	60	first strand
Strand 2	H	31	35	parallel
Strand 3	H	6	10	parallel
Strand 4	H	82	87	parallel
Strand 5	H	134	138	parallel
Strand 6	H	177	181	parallel
Strand 7	H	224	225	parallel

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There are 7 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	60	first strand
Strand 2	I	31	35	parallel
Strand 3	I	6	10	parallel
Strand 4	I	82	87	parallel
Strand 5	I	134	138	parallel
Strand 6	I	177	181	parallel
Strand 7	I	224	225	parallel

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There are 7 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	60	first strand
Strand 2	J	31	35	parallel
Strand 3	J	6	10	parallel
Strand 4	J	82	87	parallel
Strand 5	J	134	138	parallel
Strand 6	J	177	181	parallel
Strand 7	J	224	225	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BMV