Analysis of interatomic Contacts of Structural Units in PDB entry:
4BMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BMY entry

There are 2 chains in PDB entry 4BMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2LEU 231
B
 VAL 2LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4BMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 23Right-handed alpha
Helix 2
2
A
54 70Right-handed alpha
Helix 3
3
A
105 109Right-handed 310
Helix 4
4
A
125 140Right-handed alpha
Helix 5
5
A
157 169Right-handed alpha
Helix 6
6
A
176 188Right-handed alpha
Helix 7
7
A
210 229Right-handed alpha
Helix 8
8
B
11 23Right-handed alpha
Helix 9
9
B
54 70Right-handed alpha
Helix 10
10
B
105 109Right-handed 310
Helix 11
11
B
125 140Right-handed alpha
Helix 12
12
B
157 169Right-handed alpha
Helix 13
13
B
176 187Right-handed alpha
Helix 14
14
B
210 229Right-handed alpha
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There are 4 sheets in PDB entry 4BMY. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
3 9parallel
Strand 5
A
73 82parallel
Strand 6
A
191 199parallel
Strand 7
A
92 100anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
73 82parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
34 41anti-parallel
Strand 3
B
44 50anti-parallel
Strand 4
B
3 9parallel
Strand 5
B
73 82parallel
Strand 6
B
191 199parallel
Strand 7
B
92 100anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
73 82parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il