Analysis of interatomic Contacts of Structural Units in PDB entry:
4BO4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BO4 entry

There are 4 chains in PDB entry 4BO4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -1SER 247
B
 ASN -5SER 247
C
 HIS -19SER 247
D
 LEU -4SER 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 4BO4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
38 52Right-handed alpha
Helix 3
3
A
65 80Right-handed alpha
Helix 4
4
A
105 132Right-handed alpha
Helix 5
5
A
146 173Right-handed alpha
Helix 6
6
A
196 206Right-handed alpha
Helix 7
7
A
214 227Right-handed alpha
Helix 8
8
A
228 231Right-handed 310
Helix 9
9
B
15 28Right-handed alpha
Helix 10
10
B
38 52Right-handed alpha
Helix 11
11
B
65 80Right-handed alpha
Helix 12
12
B
105 132Right-handed alpha
Helix 13
13
B
147 173Right-handed alpha
Helix 14
14
B
189 194Right-handed alpha
Helix 15
15
B
196 205Right-handed alpha
Helix 16
16
B
214 226Right-handed alpha
Helix 17
17
B
227 231Right-handed 310
Helix 18
18
C
15 28Right-handed alpha
Helix 19
19
C
38 52Right-handed alpha
Helix 20
20
C
65 80Right-handed alpha
Helix 21
21
C
93 101Right-handed alpha
Helix 22
22
C
105 132Right-handed alpha
Helix 23
23
C
147 173Right-handed alpha
Helix 24
24
C
198 205Right-handed alpha
Helix 25
25
C
214 227Right-handed alpha
Helix 26
26
C
228 231Right-handed 310
Helix 27
27
D
15 28Right-handed alpha
Helix 28
28
D
38 52Right-handed alpha
Helix 29
29
D
65 80Right-handed alpha
Helix 30
30
D
105 132Right-handed alpha
Helix 31
31
D
147 173Right-handed alpha
Helix 32
32
D
189 194Right-handed alpha
Helix 33
33
D
196 205Right-handed alpha
Helix 34
34
D
214 226Right-handed alpha
Helix 35
35
D
227 231Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 4BO4. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
31 36parallel
Strand 3
A
7 11parallel
Strand 4
A
85 88parallel
Strand 5
A
134 139parallel
Strand 6
A
177 184parallel
Strand 7
A
237 240parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
31 36parallel
Strand 3
B
7 11parallel
Strand 4
B
85 88parallel
Strand 5
B
134 139parallel
Strand 6
B
177 184parallel
Strand 7
B
237 240parallel
Back to list of sheets
Back to top of page

There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
-16 -14first strand
Strand 2
C
56 60anti-parallel
Strand 3
C
31 36parallel
Strand 4
C
7 11parallel
Strand 5
C
85 88parallel
Strand 6
C
134 139parallel
Strand 7
C
177 184parallel
Strand 8
C
237 240parallel
Back to list of sheets
Back to top of page

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 60first strand
Strand 2
D
31 36parallel
Strand 3
D
7 11parallel
Strand 4
D
85 88parallel
Strand 5
D
134 139parallel
Strand 6
D
177 184parallel
Strand 7
D
237 240parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il