Analysis of interatomic Contacts of Structural Units in PDB entry:
4BOC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BOC entry

There are 4 chains in PDB entry 4BOC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 218SER 1230
N
 A -26 G 0
R
 G 1 C 9
T
 C -9 T 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 4BOC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
220 237Right-handed alpha
Helix 2
2
A
238 252Right-handed alpha
Helix 3
3
A
252 257Right-handed alpha
Helix 4
4
A
260 275Right-handed alpha
Helix 5
5
A
276 290Right-handed alpha
Helix 6
6
A
295 310Right-handed alpha
Helix 7
7
A
312 326Right-handed alpha
Helix 8
8
A
329 337Right-handed alpha
Helix 9
9
A
340 355Right-handed alpha
Helix 10
10
A
374 379Right-handed alpha
Helix 11
11
A
392 410Right-handed alpha
Helix 12
12
A
423 462Right-handed alpha
Helix 13
13
A
467 472Right-handed alpha
Helix 14
14
A
475 490Right-handed alpha
Helix 15
15
A
497 520Right-handed alpha
Helix 16
16
A
521 534Right-handed alpha
Helix 17
17
A
548 557Right-handed alpha
Helix 18
18
A
568 587Right-handed alpha
Helix 19
19
A
624 635Right-handed alpha
Helix 20
20
A
644 646Right-handed 310
Helix 21
21
A
676 687Right-handed alpha
Helix 22
22
A
688 691Right-handed 310
Helix 23
23
A
692 705Right-handed alpha
Helix 24
24
A
710 722Right-handed alpha
Helix 25
25
A
727 730Right-handed 310
Helix 26
26
A
734 738Right-handed 310
Helix 27
27
A
751 789Right-handed alpha
Helix 28
28
A
818 824Right-handed alpha
Helix 29
29
A
836 850Right-handed alpha
Helix 30
30
A
856 867Right-handed alpha
Helix 31
31
A
867 877Right-handed alpha
Helix 32
32
A
883 888Right-handed 310
Helix 33
33
A
890 906Right-handed alpha
Helix 34
34
A
909 912Right-handed 310
Helix 35
35
A
925 935Right-handed alpha
Helix 36
36
A
937 944Right-handed alpha
Helix 37
37
A
954 974Right-handed alpha
Helix 38
38
A
975 981Right-handed alpha
Helix 39
39
A
986 997Right-handed alpha
Helix 40
40
A
998 1000Right-handed 310
Helix 41
41
A
1002 1016Right-handed alpha
Helix 42
42
A
1024 1044Right-handed alpha
Helix 43
43
A
1044 1064Right-handed alpha
Helix 44
44
A
1111 1142Right-handed alpha
Helix 45
45
A
1159 1176Right-handed alpha
Helix 46
46
A
1178 1192Right-handed alpha
Helix 47
47
A
1198 1209Right-handed alpha
Helix 48
48
A
1218 1225Right-handed 310
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There are 10 sheets in PDB entry 4BOC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
638 642anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
618 623anti-parallel
Strand 3
A
606 611anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
602 604anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 657first strand
Strand 2
A
660 662anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 795first strand
Strand 2
A
706 709anti-parallel
Strand 3
A
825 827anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
806 808anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 832first strand
Strand 2
A
914 915anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1147 1148first strand
Strand 2
A
1152 1156anti-parallel
Strand 3
A
918 923anti-parallel
Strand 4
A
1229 1230anti-parallel
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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1071first strand
Strand 2
A
1077 1079anti-parallel
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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1083 1084first strand
Strand 2
A
1109 1110anti-parallel
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