Analysis of interatomic Contacts of Structural Units in PDB entry:
4BOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BOF entry

There are 4 chains in PDB entry 4BOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 4	ILE 411
B	MET 1	ILE 411
C	ALA 3	ILE 411
D	ALA 3	TYR 35

There are159 helices in PDB entry 4BOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	32	36	Right-handed 310
Helix 2	2	A	46	63	Right-handed alpha
Helix 3	3	A	71	77	Right-handed alpha
Helix 4	4	A	81	95	Right-handed alpha
Helix 5	5	A	100	113	Right-handed alpha
Helix 6	6	A	116	127	Right-handed alpha
Helix 7	7	A	131	133	Right-handed 310
Helix 8	8	A	137	141	Right-handed 310
Helix 9	9	A	142	147	Right-handed alpha
Helix 10	10	A	158	163	Right-handed 310
Helix 11	11	A	184	188	Right-handed 310
Helix 12	12	A	189	199	Right-handed alpha
Helix 13	13	A	220	222	Right-handed 310
Helix 14	14	A	241	255	Right-handed alpha
Helix 15	15	A	275	278	Right-handed 310
Helix 16	16	A	292	296	Right-handed 310
Helix 17	17	A	318	328	Right-handed alpha
Helix 18	18	A	341	351	Right-handed alpha
Helix 19	19	A	370	380	Right-handed alpha
Helix 20	20	A	391	396	Right-handed 310
Helix 21	21	B	32	36	Right-handed 310
Helix 22	22	B	46	63	Right-handed alpha
Helix 23	23	B	71	77	Right-handed alpha
Helix 24	24	B	81	95	Right-handed alpha
Helix 25	25	B	100	113	Right-handed alpha
Helix 26	26	B	116	127	Right-handed alpha
Helix 27	27	B	131	133	Right-handed 310
Helix 28	28	B	137	141	Right-handed 310
Helix 29	29	B	142	147	Right-handed alpha
Helix 30	30	B	158	163	Right-handed 310
Helix 31	31	B	188	199	Right-handed alpha
Helix 32	32	B	220	222	Right-handed 310
Helix 33	33	B	241	255	Right-handed alpha
Helix 34	34	B	275	278	Right-handed 310
Helix 35	35	B	292	295	Right-handed 310
Helix 36	36	B	318	328	Right-handed alpha
Helix 37	37	B	341	351	Right-handed alpha
Helix 38	38	B	370	380	Right-handed alpha
Helix 39	39	B	391	396	Right-handed 310
Helix 40	40	C	32	36	Right-handed 310
Helix 41	41	C	46	63	Right-handed alpha
Helix 42	42	C	71	77	Right-handed alpha
Helix 43	43	C	81	95	Right-handed alpha
Helix 44	44	C	100	113	Right-handed alpha
Helix 45	45	C	116	127	Right-handed alpha
Helix 46	46	C	131	133	Right-handed 310
Helix 47	47	C	137	141	Right-handed 310
Helix 48	48	C	142	147	Right-handed alpha
Helix 49	49	C	158	163	Right-handed 310
Helix 50	50	C	182	187	Right-handed alpha
Helix 51	51	C	188	199	Right-handed alpha
Helix 52	52	C	220	222	Right-handed 310
Helix 53	53	C	241	256	Right-handed alpha
Helix 54	54	C	275	278	Right-handed 310
Helix 55	55	C	292	296	Right-handed 310
Helix 56	56	C	306	309	Right-handed 310
Helix 57	57	C	318	328	Right-handed alpha
Helix 58	58	C	341	351	Right-handed alpha
Helix 59	59	C	370	380	Right-handed alpha
Helix 60	60	C	391	396	Right-handed 310
Helix 61	61	D	32	36	Right-handed 310
Helix 62	62	D	46	63	Right-handed alpha
Helix 63	63	D	71	77	Right-handed alpha
Helix 64	64	D	81	95	Right-handed alpha
Helix 65	65	D	100	113	Right-handed alpha
Helix 66	66	D	116	127	Right-handed alpha
Helix 67	67	D	131	133	Right-handed 310
Helix 68	68	D	137	141	Right-handed 310
Helix 69	69	D	142	147	Right-handed alpha
Helix 70	70	D	158	163	Right-handed 310
Helix 71	71	D	182	187	Right-handed alpha
Helix 72	72	D	188	199	Right-handed alpha
Helix 73	73	D	220	222	Right-handed 310
Helix 74	74	D	241	256	Right-handed alpha
Helix 75	75	D	275	278	Right-handed 310
Helix 76	76	D	292	296	Right-handed 310
Helix 77	77	D	318	328	Right-handed alpha
Helix 78	78	D	341	351	Right-handed alpha
Helix 79	79	D	370	380	Right-handed alpha
Helix 80	80	D	391	396	Right-handed 310
Helix 81	81	E	32	36	Right-handed 310
Helix 82	82	E	46	63	Right-handed alpha
Helix 83	83	E	71	77	Right-handed alpha
Helix 84	84	E	81	95	Right-handed alpha
Helix 85	85	E	100	112	Right-handed alpha
Helix 86	86	E	116	127	Right-handed alpha
Helix 87	87	E	131	133	Right-handed 310
Helix 88	88	E	137	141	Right-handed 310
Helix 89	89	E	142	147	Right-handed alpha
Helix 90	90	E	158	163	Right-handed 310
Helix 91	91	E	185	187	Right-handed 310
Helix 92	92	E	188	199	Right-handed alpha
Helix 93	93	E	220	222	Right-handed 310
Helix 94	94	E	241	255	Right-handed alpha
Helix 95	95	E	292	296	Right-handed 310
Helix 96	96	E	318	328	Right-handed alpha
Helix 97	97	E	341	351	Right-handed alpha
Helix 98	98	E	370	380	Right-handed alpha
Helix 99	99	E	391	396	Right-handed 310
Helix 100	100	F	32	36	Right-handed 310
Helix 101	101	F	46	63	Right-handed alpha
Helix 102	102	F	71	77	Right-handed alpha
Helix 103	103	F	81	95	Right-handed alpha
Helix 104	104	F	100	113	Right-handed alpha
Helix 105	105	F	116	127	Right-handed alpha
Helix 106	106	F	131	133	Right-handed 310
Helix 107	107	F	137	141	Right-handed 310
Helix 108	108	F	142	147	Right-handed alpha
Helix 109	109	F	158	163	Right-handed 310
Helix 110	110	F	184	187	Right-handed 310
Helix 111	111	F	188	199	Right-handed alpha
Helix 112	112	F	220	222	Right-handed 310
Helix 113	113	F	241	253	Right-handed alpha
Helix 114	114	F	275	278	Right-handed 310
Helix 115	115	F	292	296	Right-handed 310
Helix 116	116	F	318	328	Right-handed alpha
Helix 117	117	F	341	351	Right-handed alpha
Helix 118	118	F	370	380	Right-handed alpha
Helix 119	119	F	391	396	Right-handed 310
Helix 120	120	G	32	36	Right-handed 310
Helix 121	121	G	46	63	Right-handed alpha
Helix 122	122	G	71	77	Right-handed alpha
Helix 123	123	G	81	96	Right-handed alpha
Helix 124	124	G	100	113	Right-handed alpha
Helix 125	125	G	116	127	Right-handed alpha
Helix 126	126	G	131	133	Right-handed 310
Helix 127	127	G	137	141	Right-handed 310
Helix 128	128	G	142	147	Right-handed alpha
Helix 129	129	G	158	163	Right-handed 310
Helix 130	130	G	182	187	Right-handed alpha
Helix 131	131	G	188	199	Right-handed alpha
Helix 132	132	G	220	222	Right-handed 310
Helix 133	133	G	241	255	Right-handed alpha
Helix 134	134	G	275	278	Right-handed 310
Helix 135	135	G	292	296	Right-handed 310
Helix 136	136	G	318	328	Right-handed alpha
Helix 137	137	G	341	351	Right-handed alpha
Helix 138	138	G	370	380	Right-handed alpha
Helix 139	139	G	391	396	Right-handed 310
Helix 140	140	H	32	36	Right-handed 310
Helix 141	141	H	46	63	Right-handed alpha
Helix 142	142	H	71	77	Right-handed alpha
Helix 143	143	H	81	95	Right-handed alpha
Helix 144	144	H	100	113	Right-handed alpha
Helix 145	145	H	116	127	Right-handed alpha
Helix 146	146	H	131	133	Right-handed 310
Helix 147	147	H	137	141	Right-handed 310
Helix 148	148	H	142	147	Right-handed alpha
Helix 149	149	H	158	163	Right-handed 310
Helix 150	150	H	185	187	Right-handed 310
Helix 151	151	H	188	199	Right-handed alpha
Helix 152	152	H	220	222	Right-handed 310
Helix 153	153	H	241	255	Right-handed alpha
Helix 154	154	H	275	278	Right-handed 310
Helix 155	155	H	292	296	Right-handed 310
Helix 156	156	H	318	328	Right-handed alpha
Helix 157	157	H	341	351	Right-handed alpha
Helix 158	158	H	370	380	Right-handed alpha
Helix 159	159	H	391	396	Right-handed 310

There are 48 sheets in PDB entry 4BOF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF, A, DB, C, DD, DE, DF, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE, FF, GA, GB, GC, GD, GE, GF, HA, HB, HC, HD, HE, HF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	16	21	parallel
Strand 3	A	404	408	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	153	155	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	174	177	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	231	236	anti-parallel
Strand 3	A	261	266	parallel
Strand 4	A	299	305	anti-parallel
Strand 5	A	310	315	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	284	first strand
Strand 2	A	287	290	anti-parallel
Strand 3	A	333	336	parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	360	first strand
Strand 2	A	363	367	anti-parallel
Strand 3	A	383	387	parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	16	21	parallel
Strand 3	B	404	408	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	153	155	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	171	first strand
Strand 2	B	174	177	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	231	236	anti-parallel
Strand 3	B	261	266	parallel
Strand 4	B	299	306	anti-parallel
Strand 5	B	309	315	anti-parallel

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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	284	first strand
Strand 2	B	287	290	anti-parallel
Strand 3	B	333	336	parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	360	first strand
Strand 2	B	363	367	anti-parallel
Strand 3	B	383	387	parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	16	21	parallel
Strand 3	C	404	408	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	153	155	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	174	177	anti-parallel
Strand 3	C	209	211	parallel

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There are 5 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	231	236	anti-parallel
Strand 3	C	261	266	parallel
Strand 4	C	299	304	anti-parallel
Strand 5	C	311	315	anti-parallel

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There are 3 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	284	first strand
Strand 2	C	287	290	anti-parallel
Strand 3	C	333	336	parallel

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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	360	first strand
Strand 2	C	363	367	anti-parallel
Strand 3	C	383	387	parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	70	first strand
Strand 2	D	16	21	parallel
Strand 3	D	404	408	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	153	155	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	174	177	anti-parallel

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There are 5 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	231	236	anti-parallel
Strand 3	D	261	266	parallel
Strand 4	D	299	306	anti-parallel
Strand 5	D	309	315	anti-parallel

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There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	280	284	first strand
Strand 2	D	287	290	anti-parallel
Strand 3	D	333	336	parallel

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There are 3 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	360	first strand
Strand 2	D	363	367	anti-parallel
Strand 3	D	383	387	parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	70	first strand
Strand 2	E	16	21	parallel
Strand 3	E	404	408	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	153	155	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	171	first strand
Strand 2	E	174	177	anti-parallel

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There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	224	225	first strand
Strand 2	E	231	236	anti-parallel
Strand 3	E	261	266	parallel
Strand 4	E	299	306	anti-parallel
Strand 5	E	309	315	anti-parallel

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There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	280	284	first strand
Strand 2	E	287	290	anti-parallel
Strand 3	E	333	336	parallel

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There are 3 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	360	first strand
Strand 2	E	363	367	anti-parallel
Strand 3	E	383	387	parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	67	70	first strand
Strand 2	F	16	21	parallel
Strand 3	F	404	408	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	129	first strand
Strand 2	F	153	155	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	171	first strand
Strand 2	F	174	177	anti-parallel

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There are 5 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	226	first strand
Strand 2	F	231	236	anti-parallel
Strand 3	F	261	266	parallel
Strand 4	F	299	305	anti-parallel
Strand 5	F	310	315	anti-parallel

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There are 3 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	280	284	first strand
Strand 2	F	287	290	anti-parallel
Strand 3	F	333	336	parallel

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There are 3 strands in FF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	357	360	first strand
Strand 2	F	363	367	anti-parallel
Strand 3	F	383	387	parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	70	first strand
Strand 2	G	16	21	parallel
Strand 3	G	404	408	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	129	first strand
Strand 2	G	153	155	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	171	first strand
Strand 2	G	174	177	anti-parallel

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There are 5 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	224	226	first strand
Strand 2	G	231	236	anti-parallel
Strand 3	G	261	266	parallel
Strand 4	G	299	306	anti-parallel
Strand 5	G	309	315	anti-parallel

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There are 3 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	280	284	first strand
Strand 2	G	287	290	anti-parallel
Strand 3	G	333	336	parallel

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There are 3 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	360	first strand
Strand 2	G	363	367	anti-parallel
Strand 3	G	383	387	parallel

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There are 3 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	70	first strand
Strand 2	H	16	21	parallel
Strand 3	H	404	408	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	129	first strand
Strand 2	H	153	155	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	168	171	first strand
Strand 2	H	174	177	anti-parallel

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There are 5 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	224	226	first strand
Strand 2	H	231	236	anti-parallel
Strand 3	H	261	266	parallel
Strand 4	H	299	306	anti-parallel
Strand 5	H	309	315	anti-parallel

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There are 3 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	280	284	first strand
Strand 2	H	287	290	anti-parallel
Strand 3	H	333	336	parallel

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There are 3 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	357	360	first strand
Strand 2	H	363	367	anti-parallel
Strand 3	H	383	387	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BOF