Analysis of interatomic Contacts of Structural Units in PDB entry:
4BOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BOT entry

There are 5 chains in PDB entry 4BOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1GLY 437
B
 SER 1ALA 469
C
 VAL 1PRO 485
D
 SER 1GLY 437
E
 ASN 1PHE 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 4BOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 14Right-handed alpha
Helix 2
2
A
71 76Right-handed alpha
Helix 3
3
A
83 85Right-handed 310
Helix 4
4
A
212 239Right-handed alpha
Helix 5
5
A
242 271Right-handed alpha
Helix 6
6
A
274 276Right-handed 310
Helix 7
7
A
277 301Right-handed alpha
Helix 8
8
A
374 399Right-handed alpha
Helix 9
9
A
405 436Right-handed alpha
Helix 10
10
B
3 15Right-handed alpha
Helix 11
11
B
220 241Right-handed alpha
Helix 12
12
B
247 275Right-handed alpha
Helix 13
13
B
281 307Right-handed alpha
Helix 14
14
B
403 430Right-handed alpha
Helix 15
15
B
432 462Right-handed alpha
Helix 16
16
B
463 466Right-handed 310
Helix 17
17
C
3 12Right-handed alpha
Helix 18
18
C
83 87Right-handed 310
Helix 19
19
C
132 136Right-handed 310
Helix 20
20
C
179 183Right-handed 310
Helix 21
21
C
227 254Right-handed alpha
Helix 22
22
C
256 284Right-handed alpha
Helix 23
23
C
288 315Right-handed alpha
Helix 24
24
C
421 449Right-handed alpha
Helix 25
25
C
452 480Right-handed alpha
Helix 26
26
D
3 14Right-handed alpha
Helix 27
27
D
62 66Right-handed 310
Helix 28
28
D
71 76Right-handed alpha
Helix 29
29
D
83 85Right-handed 310
Helix 30
30
D
166 170Right-handed 310
Helix 31
31
D
212 240Right-handed alpha
Helix 32
32
D
242 271Right-handed alpha
Helix 33
33
D
274 276Right-handed 310
Helix 34
34
D
277 301Right-handed alpha
Helix 35
35
D
374 401Right-handed alpha
Helix 36
36
D
404 436Right-handed alpha
Helix 37
37
E
2 14Right-handed alpha
Helix 38
38
E
62 65Right-handed 310
Helix 39
39
E
80 84Right-handed 310
Helix 40
40
E
172 176Right-handed 310
Helix 41
41
E
221 246Right-handed alpha
Helix 42
42
E
247 249Right-handed 310
Helix 43
43
E
250 279Right-handed alpha
Helix 44
44
E
283 307Right-handed alpha
Helix 45
45
E
414 442Right-handed alpha
Helix 46
46
E
443 474Right-handed alpha
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There are 23 sheets in PDB entry 4BOT. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, BD, CA, CB, CC, CD, CE, CF, A, DB, C, DD, DE, EA, EB, EC, ED, EE,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
107 110anti-parallel
Strand 3
A
116 118anti-parallel
Strand 4
A
49 60anti-parallel
Strand 5
A
121 127parallel
Strand 6
A
100 101parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
107 110anti-parallel
Strand 3
A
116 118anti-parallel
Strand 4
A
49 60anti-parallel
Strand 5
A
29 44anti-parallel
Strand 6
A
156 159parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
140 148anti-parallel
Strand 3
A
199 208anti-parallel
Strand 4
A
177 187anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
107 111anti-parallel
Strand 3
B
115 118anti-parallel
Strand 4
B
57 61anti-parallel
Strand 5
B
30 34anti-parallel
Strand 6
B
157 159parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 44first strand
Strand 2
B
49 55anti-parallel
Strand 3
B
121 126anti-parallel
Strand 4
B
100 101anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
143 148anti-parallel
Strand 3
B
207 210anti-parallel
Strand 4
B
193 195anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
213 214anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 82first strand
Strand 2
C
110 112anti-parallel
Strand 3
C
117 120anti-parallel
Strand 4
C
51 63anti-parallel
Strand 5
C
123 128anti-parallel
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There are 6 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 82first strand
Strand 2
C
110 112anti-parallel
Strand 3
C
117 120anti-parallel
Strand 4
C
51 63anti-parallel
Strand 5
C
32 46parallel
Strand 6
C
159 161parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
123 128first strand
Strand 2
C
51 63anti-parallel
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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
143 150anti-parallel
Strand 3
C
213 223anti-parallel
Strand 4
C
197 201parallel
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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
143 150anti-parallel
Strand 3
C
213 223anti-parallel
Strand 4
C
190 194anti-parallel
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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
197 201first strand
Strand 2
C
213 223parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 32first strand
Strand 2
D
157 159parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 44first strand
Strand 2
D
49 55anti-parallel
Strand 3
D
121 127anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
116 118anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 81first strand
Strand 2
D
107 110anti-parallel
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There are 4 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 92first strand
Strand 2
D
141 148anti-parallel
Strand 3
D
199 208anti-parallel
Strand 4
D
177 187anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
108 109first strand
Strand 2
E
114 117anti-parallel
Strand 3
E
48 60parallel
Strand 4
E
120 125anti-parallel
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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
108 109first strand
Strand 2
E
114 117anti-parallel
Strand 3
E
48 60parallel
Strand 4
E
30 43anti-parallel
Strand 5
E
157 158parallel
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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
120 125first strand
Strand 2
E
48 60anti-parallel
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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
89 91first strand
Strand 2
E
143 147anti-parallel
Strand 3
E
207 210anti-parallel
Strand 4
E
192 193anti-parallel
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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
183 187first strand
Strand 2
E
213 216anti-parallel
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