Analysis of interatomic Contacts of Structural Units in PDB entry:
4BOW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4BOW entry

There are 2 chains in PDB entry 4BOW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 136GLN 383
B
 ALA 136GLN 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 4BOW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
358 363Right-handed alpha
Helix 2
2
B
358 363Right-handed alpha
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There are 8 sheets in PDB entry 4BOW. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 144first strand
Strand 2
A
371 383anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
205 211parallel
Strand 3
A
190 202anti-parallel
Strand 4
A
371 383anti-parallel
Strand 5
A
223 230anti-parallel
Strand 6
A
314 320anti-parallel
Strand 7
A
324 329anti-parallel
Strand 8
A
332 338anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
205 211parallel
Strand 3
A
190 202anti-parallel
Strand 4
A
184 187parallel
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There are 7 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
213 220anti-parallel
Strand 3
A
349 357anti-parallel
Strand 4
A
237 245anti-parallel
Strand 5
A
269 274anti-parallel
Strand 6
A
282 290anti-parallel
Strand 7
A
297 305anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 144first strand
Strand 2
B
371 383anti-parallel
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There are 8 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
205 211parallel
Strand 3
B
190 202anti-parallel
Strand 4
B
371 383anti-parallel
Strand 5
B
223 230anti-parallel
Strand 6
B
314 320anti-parallel
Strand 7
B
324 329anti-parallel
Strand 8
B
332 338anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 177first strand
Strand 2
B
205 211parallel
Strand 3
B
190 202anti-parallel
Strand 4
B
184 187parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
213 220anti-parallel
Strand 3
B
349 357anti-parallel
Strand 4
B
237 245anti-parallel
Strand 5
B
269 274anti-parallel
Strand 6
B
282 291anti-parallel
Strand 7
B
296 305anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il