Analysis of interatomic Contacts of Structural Units in PDB entry:
4BP8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4BP8 entry

There are 2 chains in PDB entry 4BP8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	LYS 715
B	THR 3	THR 552

There are 52 helices in PDB entry 4BP8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	41	45	Right-handed 310
Helix 2	2	A	51	69	Right-handed alpha
Helix 3	3	A	72	85	Right-handed alpha
Helix 4	4	A	137	142	Right-handed alpha
Helix 5	5	A	180	182	Right-handed 310
Helix 6	6	A	198	200	Right-handed 310
Helix 7	7	A	210	212	Right-handed 310
Helix 8	8	A	225	229	Right-handed 310
Helix 9	9	A	271	273	Right-handed 310
Helix 10	10	A	373	377	Right-handed 310
Helix 11	11	A	393	396	Right-handed 310
Helix 12	12	A	440	442	Right-handed 310
Helix 13	13	A	494	496	Right-handed 310
Helix 14	14	A	497	502	Right-handed alpha
Helix 15	15	A	519	525	Right-handed alpha
Helix 16	16	A	528	531	Right-handed 310
Helix 17	17	A	532	549	Right-handed alpha
Helix 18	18	A	553	555	Right-handed 310
Helix 19	19	A	564	576	Right-handed alpha
Helix 20	20	A	577	580	Right-handed 310
Helix 21	21	A	591	597	Right-handed alpha
Helix 22	22	A	603	612	Right-handed alpha
Helix 23	23	A	619	627	Right-handed alpha
Helix 24	24	A	628	632	Right-handed 310
Helix 25	25	A	653	667	Right-handed alpha
Helix 26	26	A	689	708	Right-handed alpha
Helix 27	27	B	41	45	Right-handed 310
Helix 28	28	B	51	69	Right-handed alpha
Helix 29	29	B	72	86	Right-handed alpha
Helix 30	30	B	137	142	Right-handed alpha
Helix 31	31	B	180	182	Right-handed 310
Helix 32	32	B	198	200	Right-handed 310
Helix 33	33	B	210	212	Right-handed 310
Helix 34	34	B	225	229	Right-handed 310
Helix 35	35	B	271	273	Right-handed 310
Helix 36	36	B	373	377	Right-handed 310
Helix 37	37	B	393	396	Right-handed 310
Helix 38	38	B	440	442	Right-handed 310
Helix 39	39	B	494	496	Right-handed 310
Helix 40	40	B	497	502	Right-handed alpha
Helix 41	41	B	520	525	Right-handed alpha
Helix 42	42	B	528	531	Right-handed 310
Helix 43	43	B	532	549	Right-handed alpha
Helix 44	44	B	553	555	Right-handed 310
Helix 45	45	B	563	576	Right-handed alpha
Helix 46	46	B	577	580	Right-handed 310
Helix 47	47	B	591	597	Right-handed alpha
Helix 48	48	B	603	608	Right-handed alpha
Helix 49	49	B	619	625	Right-handed alpha
Helix 50	50	B	627	632	Right-handed alpha
Helix 51	51	B	653	667	Right-handed alpha
Helix 52	52	B	689	707	Right-handed alpha

There are 24 sheets in PDB entry 4BP8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	18	first strand
Strand 2	A	35	38	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	92	first strand
Strand 2	A	101	107	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	101	107	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	115	120	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	96	98	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	115	120	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	91	92	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	154	first strand
Strand 2	A	162	167	anti-parallel
Strand 3	A	174	178	anti-parallel
Strand 4	A	187	190	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	202	208	anti-parallel
Strand 3	A	214	221	anti-parallel
Strand 4	A	230	234	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	246	first strand
Strand 2	A	252	258	anti-parallel
Strand 3	A	263	269	anti-parallel
Strand 4	A	280	281	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	300	305	anti-parallel
Strand 3	A	314	319	anti-parallel
Strand 4	A	329	331	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	344	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	358	365	anti-parallel
Strand 4	A	378	379	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	391	first strand
Strand 2	A	403	410	anti-parallel
Strand 3	A	413	421	anti-parallel
Strand 4	A	427	432	anti-parallel

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There are 8 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	452	first strand
Strand 2	A	458	466	anti-parallel
Strand 3	A	506	510	anti-parallel
Strand 4	A	477	480	parallel
Strand 5	A	557	562	parallel
Strand 6	A	582	586	parallel
Strand 7	A	639	645	parallel
Strand 8	A	673	678	parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	35	38	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	101	107	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	101	107	anti-parallel

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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	115	120	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	96	98	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	115	120	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	91	92	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	154	first strand
Strand 2	B	162	167	anti-parallel
Strand 3	B	174	178	anti-parallel
Strand 4	B	187	190	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	196	first strand
Strand 2	B	202	208	anti-parallel
Strand 3	B	214	221	anti-parallel
Strand 4	B	230	234	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	246	first strand
Strand 2	B	252	258	anti-parallel
Strand 3	B	263	269	anti-parallel
Strand 4	B	280	281	anti-parallel

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There are 4 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	296	first strand
Strand 2	B	300	305	anti-parallel
Strand 3	B	314	319	anti-parallel
Strand 4	B	328	331	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	344	first strand
Strand 2	B	348	355	anti-parallel
Strand 3	B	358	365	anti-parallel
Strand 4	B	378	379	anti-parallel

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There are 4 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	391	first strand
Strand 2	B	403	410	anti-parallel
Strand 3	B	413	421	anti-parallel
Strand 4	B	427	432	anti-parallel

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There are 8 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	452	first strand
Strand 2	B	458	466	anti-parallel
Strand 3	B	506	510	anti-parallel
Strand 4	B	477	480	parallel
Strand 5	B	557	562	parallel
Strand 6	B	582	586	parallel
Strand 7	B	639	645	parallel
Strand 8	B	673	678	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4BP8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4BP8